| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NZ_CP009273 | = 3575002 | 141 (2.970) | 3 (0.070) | 3/142 | 3.2 | 2.3% | intergenic (+16/‑221) | yhhY/hcp | N‑acetyltransferase/Hcp1 family type VI secretion system effector |
| ? | NZ_CP009273 | = 3575009 | 133 (3.160) | intergenic (+23/‑214) | yhhY/hcp | N‑acetyltransferase/Hcp1 family type VI secretion system effector | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
TACGCATTGCGTAATGGTGAATATGTCGATGCATATTATATGGCGCGGGTGAAGTAAGATAGTGCCCTTTTTC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NZ_CP009273/3574930‑3575002‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccctttttcCATCTCAGAAAAAGGGCACTATCTTACTTCACCCGCGCCATATAATATGCATCGACATATTCACCATTACGCAATGCGTACTTC < NZ_CP009273/3575009‑3574926 TACGCATTGCGTAATGGTGAATATGTCGATGCATATTATATGGCGCGGGTTAAGTAAGATAGTGCCCTTTTTCCATCTCAGAAAAAGGGC < 1:1321958/90‑1 GAATATGTCGATGCATATTATATGGCGCGGGTGAAGTAAGATAGTGCCCTTTTTCCATCTCAGAAAAAGGGCACTATCTTACTTCACCCG < 1:302205/90‑1 CGGGTGAAGTAAGATAGTGCCCTTTTTCCATCTCAGAAAAAGGGCACTATCTTACTTCACCCGCGCCATATAATATGCATCGACATATTC < 2:302205/90‑1 CTTTTTCCATCTCAGAAAAAGGGCACTATCTTACTTCACCCGCGCCATATAATATGCATCGACATATTCACCATTACGCAATGCGTACTT > 1:875519/1‑90 CTTTTTCCATCTCAGAAAAAGGGCACTATCTTACTTCACCCGCGC > 1:323222/1‑45 CTTTTTCCATCTCAGAAAAAGGGCACTATCTTACTTCACCCGCGC < 2:323222/45‑1 TTTTTCCATCTCAGAAAAAGGGCACTATCTTACTTCACCCGCGCCATATAATATGCATCGACATATTCACCATTACGCAATGCGTACTTC < 2:875519/90‑1 TACGCATTGCGTAATGGTGAATATGTCGATGCATATTATATGGCGCGGGTGAAGTAAGATAGTGCCCTTTTTC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NZ_CP009273/3574930‑3575002‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccctttttcCATCTCAGAAAAAGGGCACTATCTTACTTCACCCGCGCCATATAATATGCATCGACATATTCACCATTACGCAATGCGTACTTC < NZ_CP009273/3575009‑3574926 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |