| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NZ_CP009273 | = 3575002 | 141 (2.970) | 3 (0.070) | 3/142 | 3.2 | 2.3% | intergenic (+16/‑221) | yhhY/hcp | N‑acetyltransferase/Hcp1 family type VI secretion system effector |
| ? | NZ_CP009273 | = 3575009 | 133 (3.160) | intergenic (+23/‑214) | yhhY/hcp | N‑acetyltransferase/Hcp1 family type VI secretion system effector | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
Only 100 of 137 total aligned reads displayed.
GAAGTACGCATTGCGTAATGGTGAATATGTCGATGCATATTATATGGCGCGGGTGAAGTAAGATAGTGCCCTTTTTCTGAGATGGAAAAAGGGTGTCATTCAAAATCGACATACCTTCCTTTAAGGTATTTATTTGCCCAATACATATATTGAGATTTAACTCATAATTACTT > NZ_CP009273/3574926‑3575098 | gaagTACGCATTGCGTAATGGTGAATATGTCGATGCATATTATATGGCGCGGGTGAAGTAAGATAGTGCCCTTTTTCTGAGATGGaaaaa > 2:875519/1‑90 (MQ=255) aagTACGCATTGCGTAATGGTGAATATGTCGATGCATATTATATGGCGCGGGTGAAGTAAGATAGTGCCCTTTTTCTGAGATGGAAAAAg < 1:875519/90‑1 (MQ=255) aCGCATTGCGTAATGGTGAATATGTCGATGCATATTATATGGCGCGGGTGAAGTAAGATAGTGCCCTTTTTCTGAGATGGAAAAAGGgtg > 1:874377/1‑90 (MQ=255) aCGCATTGCGTAATGGTGAATATGTCGATGCATATTATATGGCGCGGGTGAAGTAAGATAGTGCCCTTTTTCTGAGATGGAAAAAGGgtg > 1:1201731/1‑90 (MQ=255) aCGCATTGCGTAATGGTGAATATGTCGATGCATATTATATGGCGCGGGTGAAGTAAGATAGTGCCCTTTTTCTGAGATGGAAAAAGGgtg > 2:53177/1‑90 (MQ=255) aCGCATTGCGTAATGGTGAATATGTCGATGCATATTATATGGCGCGGGTGAAGTAAGATAGTGCCCTTTTTCTGAGATGGAAAAAGGgtg > 1:514887/1‑90 (MQ=255) aCGCATTGCGTAATGGTGAATATGTCGATGCATATTATATGGCGCGGGTGAAGTAAGATAGTGCCCTTTTTCTGAGATGGAAAAAGGgtg > 1:513749/1‑90 (MQ=255) aCGCATTGCGTAATGGTGAATATGTCGATGCATATTATATGGCGCGGGTGAAGTAAGATAGTGCCCTTTTTCTGAGATGGAAAAAGGgtg > 1:347885/1‑90 (MQ=255) ttGCGTAATGGTGAATATGTCGATGCATATTATATGGCGCGGGTGAAGTAAGATAGTGCCCTTTTTCTGAGATGGAAAAAGGGTGTCAtt > 2:618177/1‑90 (MQ=255) tGCGTAATGGTGAATATGTCGATGCATATTATATGGCGCGGGTGAAGTAAGATAGTGCCCTTTTTCTGAGATGGAAAAAGGGTGTCATTc < 2:1278239/90‑1 (MQ=255) gCGTAATGGTGAATATGTCGATGCATATTATATGGCGCTGGTGAAGTAAGATAGTGCCCTTTTTCTGAGATGGAAAAAGGGTGTCATTCa > 1:586572/1‑90 (MQ=255) gTAATGGTGAATATGTCGATGCATATTATATGGCGCGGGTGAAGTAAGATAGTGCCCTTTTTCTGAGATGGAAAAAGGGTGTCATTCaaa < 1:810655/90‑1 (MQ=255) tAATGGTGAATATGTCGATGCATATTATATGGCGCGGGTGAAGTAAGATAGTGCCCTTTTTCTGAGATGGAAAAAGGGTGTCATTCaaaa < 2:514887/90‑1 (MQ=255) tAATGGTGAATATGTCGATGCATATTATATGGCGCGGGTGAAGTAAGATAGTGCCCTTTTTCTGAGATGGAAAAAGGGTGTCATTCaaaa < 2:37681/90‑1 (MQ=255) aaTGGTGAATATGTCGATGCATATTATATGGCGCGGGTGAAGTAAGATAGTGCCCTTTTTCTGAGATGGAAAAAGGGTGTCATTCAAAAt < 2:533100/90‑1 (MQ=255) gAATATGTCGATGCATATTATATGGCGCGGGTGAAGTAAGATAGTGCCCTTTTTCTGAGATGGAAAAAGGGTGTCATTCaaaa > 2:658450/1‑83 (MQ=255) gAATATGTCGATGCATATTATATGGCGCGGGTGAAGTAAGATAGTGCCCTTTTTCTGAGATGGAAAAAGGGTGTCATTCAAAATCGa > 1:814734/1‑87 (MQ=255) gAATATGTCGATGCATATTATATGGCGCGGGTGAAGTAAGATAGTGCCCTTTTTCTGAGATGGAAAAAGGGTGTCATTCAAAATCGa < 2:814734/87‑1 (MQ=255) gAATATGTCGATGCATATTATATGGCGCGGGTGAAGTAAGATAGTGCCCTTTTTCTGAGATGGAAAAAGGGTGTCATTCAAAATCGACAt > 2:913217/1‑90 (MQ=255) gAATATGTCGATGCATATTATATGGCGCGGGTGAAGTAAGATAGTGCCCTTTTTCTGAGATGGAAAAAGGGTGTCATTCAAAATCGACAt > 1:1011767/1‑90 (MQ=255) gAATATGTCGATGCATATTATATGGCGCGGGTGAAGTAAGATAGTGCCCTTTTTCTGAGATGGAAAAAGGGTGTCATTCAAAATCGACAt > 2:943436/1‑90 (MQ=255) gAATATGTCGATGCATATTATATGGCGCGGGTGAAGTAAGATAGTGCCCTTTTTCTGAGATGGAAAAAGGGTGTCATTCAAAATCGACAt > 1:921827/1‑90 (MQ=255) gAATATGTCGATGCATATTATATGGCGCGGGTGAAGTAAGATAGTGCCCTTTTTCTGAGATGGAAAAAGGGTGTCATTCAAAATCGACAt > 1:505535/1‑90 (MQ=255) gAATATGTCGATGCATATTATATGGCGCGGGTGAAGTAAGATAGTGCCCTTTTTCTGAGATGGAAAAAGGGTGTCATTCAAAATCGACAt > 2:644040/1‑90 (MQ=255) atGTCGATGCATATTATATGGCGCGGGTGAAGTAAGATAGTGCCCTTTTTCTGAGATGGAAAAAGGGTGTCATTCAAAATCGACATAcct < 2:27306/90‑1 (MQ=255) atGTCGATGCATATTATATGGCGCGGGTGAAGTAAGATAGTGCCCTTTTTCTGAGATGGAAAAAGGGTGTCATTCAAAATCGACATAcct < 1:692657/90‑1 (MQ=255) atGTCGATGCATATTATATGGCGCGGGTGAAGTAAGATAGTGCCCTTTTTCTGAGATGGAAAAAGGGTGTCATTCAAAATCGACATAcct < 1:702131/90‑1 (MQ=255) tGTCGATGCATATTATATGGCGCGGGTGAAGTAAGATAGTGCCCTTTTTCTGAGATGGAAAAAGGGTGTCATTCAAAATCGACATAcctt < 2:1466949/90‑1 (MQ=255) tGTCGATGCATATTATATGGCGCGGGTGAAGTAAGATAGTGCCCTTTTTCTGAGATGGAAAAAGGGTGTCATTCAAAATCGACATAcctt > 2:395653/1‑90 (MQ=255) tCGATGCATATTATATGGCGCGGGTGAAGTAAGATAGTGCCCTTTTTCTGAGATGGAAAAAGGGTGTCATTCAAAATCGACATAccttcc > 1:134644/1‑90 (MQ=255) aTGCATATTATATGGCGCGGGTGAAGTAAGATAGTGCCCTTTTTCTGAGATGGAAAAAGGGTGTCATTCAAAATCGACATACCTTCCttt > 2:297758/1‑90 (MQ=255) aTGCATATTATATGGCGCGGGTGAAGTAAGATAGTGCCCTTTTTCTGAGATGGAAAAAGGGTGTCATTCAAAATCGACATACCTTCCttt > 1:19800/1‑90 (MQ=255) aTGCATATTATATGGCGCGGGTGAAGTAAGATAGTGCCCTTTTTCTGAGATGG‑AAAAGGGTGTCATTCAAAATCGACATACCTTCCTTTa < 2:340653/90‑1 (MQ=255) gCATATTATATGGCGCGGGTGAAGTAAGATAGTGCCCTTTTTCTGAGATGGAAAAAGGGTGTCATTCAAAATCGACATACCTTCCTTTaa < 1:962686/90‑1 (MQ=255) gCATATTATATGGCGCGGGTGAAGTAAGATAGTGCCCTTTTTCTGAGATGGAAAAAGGGTGTCATTCAAAATCGACATACCTTCCTTTaa < 2:700335/90‑1 (MQ=255) gCATATTATATGGCGCGGGTGAAGTAAGATAGTGCCCTTTTTCTGAGATGGAAAAAGGGTGTCATTCAAAATCGACATACCTTCCTTTaa < 1:943436/90‑1 (MQ=255) gCATATTATATGGCGCGGGTGAAGTAAGATAGTGCCCTTTTTCTGAGATGGAAAAAGGGTGTCATTCAAAATCGACATACCTTCCTTTaa < 2:874377/90‑1 (MQ=255) gCATATTATATGGCGCGGGTGAAGTAAGATAGTGCCCTTTTTCTGAGATGGAAAAAGGGTGTCATTCAAAATCGACATACCTTCCTTTaa < 1:1006652/90‑1 (MQ=255) gCATATTATATGGCGCGGGTGAAGTAAGATAGTGCCCTTTTTCTGAGATGGAAAAAGGGTGTCATTCAAAATCGACATACCTTCCTTTaa < 1:644040/90‑1 (MQ=255) gCATATTATATGGCGCGGGTGAAGTAAGATAGTGCCCTTTTTCTGAGATGGAAAAAGGGTGTCATTCAAAATCGACATACCTTCCTTTaa < 1:1497106/90‑1 (MQ=255) gCATATTATATGGCGCGGGTGAAGTAAGATAGTGCCCTTTTTCTGAGATGGAAAAAGGGTGTCATTCAAAATCGACATACCTTCCTTTaa < 2:936131/90‑1 (MQ=255) gCACATTATATGGCGCGGGTGAAGTAAGATAGTGCCCTTTTTCTGAGATGGAAAAAGGGTGTCATTCAAAATCGACATACCTTCCTTTaa < 2:767211/90‑1 (MQ=255) ttatATGGCGCGGGTGAAGTAAGATAGTGCCCTTTTTCTGAGATGGAAAAAGGGTGTCATTCAAAATCGACATACCTTCCTTTAAGGtat < 1:996288/90‑1 (MQ=255) ttatATGGCGCGGGTGAAGTAAGATAGTGCCCTTTTTCTGAGATGGAAAAAGGGTGTCATTCAAAATCGACATACCTTCCTTTAAGGtat < 2:505535/90‑1 (MQ=255) ttatATGGCGCGGGTGAAGTAAGATAGTGCCCTTTTTCTGAGATGGAAAAAGGGTGTCATTCAAAATCGACATACCTTCCTTTAAGGtat < 2:956784/90‑1 (MQ=255) tatGGCGCGGGTGAAGTAAGATAGTGCCCTTTTTCTGAGATGGAAAAAGGGTGTCATTCAAAATCGACATAcct < 1:12022/74‑1 (MQ=255) tatGGCGCGGGTGAAGTAAGATAGTGCCCTTTTTCTGAGATGGAAAAAGGGTGTCATTCAAAATCGACATAcct > 2:12022/1‑74 (MQ=255) tatGGCGCGGGTGAAGTAAGATAGTGCCCTTTTTCTGAGATGGAAAAAGGGTGTCATTCAAAATCGACATACCTTCCTTTAAGGtattta > 1:96175/1‑90 (MQ=255) tGGCGCGGGTGAAGTAAGATAGTGCCCTTTTTCTGAGATGGAAAAAGGGTGTCATTCAAAATCGACATACCTTCCTTTAAGGtatttatt < 2:134644/90‑1 (MQ=255) tGGCGCGGGTGAAGTAAGATAGTGCCCTTTTTCTGAGATGGAAAAAGGGTGTCATTCAAAATCGACATACCTTCCTTTAAGGtatttatt < 1:395653/90‑1 (MQ=255) tGGCGCGGGTGAAGTAAGATAGTGCCCTTTTTCTGAGATGGAAAAAGGGTGTCATTCAAAATCGACATACCTTCCTTTAAGGtatttatt < 2:547091/90‑1 (MQ=255) tGGCGCGGGTGAAGTAAGATAGTGCCCTTTTTCTGAGATGGAAAAAGGGTGTCATTCAAAATCGACATACCTTCCTTTAAGGtatttatt < 2:921827/90‑1 (MQ=255) tGGCGCGGGTGAAGTAAGATAGTGCCCTTTTTCTGAGATGGAAAAAGGGTGTCATTCAAAATCGACATACCTTCCTCTAAGGtatttatt < 1:889168/90‑1 (MQ=255) gcgcGGGTGAAGTAAGATAGTGCCCTTTTTCTGAGATGGAAAAAg > 2:323222/1‑45 (MQ=255) gcgcGGGTGAAGTAAGATAGTGCCCTTTTTCTGAGATGGAAAAAg < 1:323222/45‑1 (MQ=255) gcgcGGGTGAAGTAAGATAGTGCCCTTTTTCTGAGATGGAAAAAGGGTGTCATTCAAAATCGACATAcct > 2:110507/1‑70 (MQ=255) gcgcGGGTGAAGTAAGATAGTGCCCTTTTTCTGAGATGGAAAAAGGGTGTCATTCAAAATCGACATAcct < 1:110507/70‑1 (MQ=255) gcgcGGGTGAAGTAAGATAGTGCCCTTTTTCTGAGATGGAAAAAGGGTGTCATTCAAAATCGACATACCTTCCTTTAAGGTATTTATTTg > 2:19100/1‑90 (MQ=255) gcgcGGGTGAAGTAAGATAGTGCCCTTTTTCTGAGATGGAAAAAGGGTGTCATTCAAAATCGACATACCTTCCTTTAAGGTATTTATTTg > 1:1278346/1‑90 (MQ=255) gcgcGGGTGAAGTAAGATAGTGCCCTTTTTCTGAGATGGAAAAAGGGTGTCATTCAAAATCGACATACCTTCCTTTAAGGTATTTATTTg > 2:619076/1‑90 (MQ=255) cgcgGGTGAAGTAAGATAGTGCCCTTTTTCTGAGATGGAAAAAGGGTGTCATTCAAAATCGACAt > 2:374500/1‑65 (MQ=255) gcgGGTGAAGTAAGATAGTGCCCTTTTTCTGAGATGGAAAAAGGGTGTCATTCAAAATCGACATAcct < 2:1327779/68‑1 (MQ=255) tgcgTGAAATAAGCTACTGCCCCTTTCCCAATATCGAAAAAGGGTGTCATTCAAACTGGAGATGCCAACCTCTACGGCAGTTCTTTGccc < 1:362371/87‑1 (MQ=255) cgGGTGAAGTAAGATAGTGCCCTTTTTCTGAGATGGAAAAAGGGTGTCATTCAAAATCGACATAcct > 1:223362/1‑67 (MQ=255) cgGGTGAAGTAAGATAGTGCCCTTTTTCTGAGATGGAAAAAGGGTGTCATTCAAAATCGACATAcct < 2:223362/67‑1 (MQ=255) cgGGTGAAGTAAGATAGTGCCCTTTTTCTGAGATGGAAAAAGGGTGTCATTCAAAATCGACATACCTTCCTTTAAGGTATTTATTTGccc < 1:1131363/90‑1 (MQ=255) cgGGTGAAGTAAGATAGTGCCCTTTTTCTGAGATGGAAAAAGGGTGTCATTCAAAATCGACATACCTTCCTTTAAGGTATTTATTTGccc < 2:347885/90‑1 (MQ=255) cgGGTGAAGTAAGATAGTGCCCTTTTTCTGAGATGGAAAAAGGGTGTCATTCAAAATCGACATACCTTCCTTTAAGGTATTTATTTGccc < 2:147601/90‑1 (MQ=255) cgGGTGAAGTAAGATAGTGCCCTTTTTCTGAGATGGAAAAAGGGTGTCATTCAAAATCGACATACCTTCCTTTAAGGTATTTATTTGccc < 1:297758/90‑1 (MQ=255) cgGGTGAAGTAAGATAGTGCCCTTTTTCTGAGATGGAAAAAGGGTGTCATTCAAAATCGACATACCTTCCTTTAAGGTATTTATTTGccc < 2:1056779/90‑1 (MQ=255) gggTGAAGTAAGATAGTGCCCTTTTTCTGAGATGGAAAAAGGGTGTCATTCAAAATCGACATACCTTCCTTTAAGGTATTTATTTGCCCa > 1:457142/1‑90 (MQ=255) ggTGAAGTAAGATAGTGCCCTTTTTCTGAGATGGAAAAAGGGTGTCATTCAAAATCGACAt < 2:1284954/61‑1 (MQ=255) ggTGAAGTAAGATAGTGCCCTTTTTCTGAGATGGAAAAAGGGTGTCATTCAAAATCGACAt > 1:1284954/1‑61 (MQ=255) gTGAAGTAAGATAGTGCCCTTTTTCTGAGATGGAAAAAGGGTGTCATTCAAAATCGACATACCTTCCTTTAAGGTATTTATTTGCCCAAt < 2:1197306/90‑1 (MQ=255) gTGAAGTAAGATAGTGCCCTTTTTCTGAGATGGAAAAAGGGTGTCATTCAAAATCGACATACCTTCCTTTAAGGTATTTATTTGCCCAAt < 2:877143/90‑1 (MQ=255) gAAGTAAGATAGTGCCCTTTTTCTGAGATGGAAAAAGGGTGTCATTCAAAATCGACATACCTTCCTTTAAGGTATTTATTTGCCCAATAc < 1:642752/90‑1 (MQ=255) aaGTAAGATAGTGCCCTTTTTCTGAGATGGAAAAAGGGTGTCATTCAAAATCGACATACCTTCCTTTAAGGTATTTATTTGCCCAATACa < 1:556656/90‑1 (MQ=255) gTAAGATAGTGCCCTTTTTCTGAGATGGAAAAAGGGTGTCATTCAAAATCGACATACCTTCCTTTAAGGTATTTATTTGCCCAATACata < 2:19800/90‑1 (MQ=255) aaGATAGTGCCCTTTTTCTGAGATGGAAAAAGGGTGTCATTCAAAATCGACATACCTTCCTTTaa > 2:1239230/1‑65 (MQ=255) aGATAGTGCCCTTTTTCTGAGATGGAAAAAGGGTGTCATTCAAAATCGACATACCTTCCTTTAAGGtat < 1:654852/69‑1 (MQ=255) aGATAGTGCCCTTTTTCTGAGATGGAAAAAGGGTGTCATTCAAAATCGACATACCTTCCTTTAAGGTATTTATTTGCCCAATACat > 1:1010306/1‑86 (MQ=255) aGATAGTGCCCTTTTTCTGAGATGGAAAAAGGGTGTCATTCAAAATCGACATACCTTCCTTTAAGGTATTTATTTGCCCAATACat < 2:1010306/86‑1 (MQ=255) gATAGTGCCCTTTTTCTGAGATGGAAAAAGGGTGTCATTCAAAAt < 1:939754/45‑1 (MQ=255) gATAGTGCCCTTTTTCTGAGATGGAAAAAGGGTGTCATTCAAAATCGACATACCTTCCTTTAAGGTATTTATTTGCCCAATACATATAtt > 2:1190721/1‑90 (MQ=255) gTGCCCTTTTTCTGAGATGGAAAAAGGGTGTCATTCAAAATCGACATAcct < 1:1393824/51‑1 (MQ=255) gTGCCCTTTTTCTGAGATGGAAAAAGGGTGTCATTCAAAATCGACATAcct > 2:1393824/1‑51 (MQ=255) gTGCCCTTTTTCTGAGATGGAAAAAGGGTGTCATTCAAAATCGACATACCTTCCTTTAAGGTATTTATTTGCCCAATACATATATTgaga > 2:286443/1‑90 (MQ=255) tGCCCTTTTTCTGAGATGGAAAAAGGGTGTCATTCAAAATCGACATACCTTCCTTTAAGGTATTTATTTGCCCAATACATATATTGAGAt > 2:24098/1‑90 (MQ=255) tGCCCTTTTTCTGAGATGGAAAAAGGGTGTCATTCAAAATCGACATACCTTCCTTTAAGGTATTTATTTGCCCAATACATATATTGAGAt > 1:528278/1‑90 (MQ=255) gCCCTTTTTCTGAGATGGAAAAAGGGTGTCATTCAAAATCGACAt < 1:1412015/45‑1 (MQ=255) gCCCTTTTTCTGAGATGGAAAAAGGGTGTCATTCAAAATCGACAt > 2:1412015/1‑45 (MQ=255) gCCCTTTTTCTGAGATGGAAAAAGGGTGTCATTCAAAATCGACATACCTTCCTTTAAGGTATTTATTTGCCCAATACATATATTGAGAtt > 2:674971/1‑90 (MQ=255) gCCCTTTTTCTGAGATGGAAAAAGGGTGTCATTCAAAATCGACATACCTTCCTTTAAGGTATTTATTTGCCCAATACATATATTGAGAtt > 1:1062977/1‑90 (MQ=255) cTTTTTCTGAGATGGAAAAAGGGTGTCATTCAAAATCGACATACCTTCCTTTAAGGTATTTATTTGCCCAATACATATATTGAGATTTaa > 1:187553/1‑90 (MQ=255) tttttCTGAGATGGAAAAAGGGTGTCATTCAAAATCGACATACCTTCCTTTAAGGTATTTATTTGCCCAATACATATATTGAGATTTAAc < 2:1201731/90‑1 (MQ=255) ttttCTGAGATGGAAAAAGGGTGTCATTCAAAATCGACATACCTTCCTTTAAGGTATTTATTTGCCCAATACATATACTGAGATTTAACt > 2:1138881/1‑90 (MQ=255) gagaTGGAAAAAGGGTGTCATTCAAAATCGACATACCTTCCTTTAAGGTATTTATTTGCCCAATACATATATTGAGATTTAACTCATAAt < 1:1201688/90‑1 (MQ=255) gaTGGAAAAAGGGTGTCATTCAAAATCGACATACCTTCCTTTAAGGTATTTATTTGCCCAATACATATATTGAGATTTAACTCATAATTa < 2:1062977/90‑1 (MQ=255) gaTGGAAAAAGGGTGTCATTCAAAATCGACATACCTTCCTTTAAGGTATTTATTTGCCCAATACATATATTGAGATTTAACTCATAATTa < 1:717375/90‑1 (MQ=255) ggAAAAAGGGGGTCATTCAAAATCGACATACCTTCCTTTAAGGTATTTATTTGCCCAATACATATATTGAGATTTAACTCATAATTACtt > 1:999053/1‑90 (MQ=255) | GAAGTACGCATTGCGTAATGGTGAATATGTCGATGCATATTATATGGCGCGGGTGAAGTAAGATAGTGCCCTTTTTCTGAGATGGAAAAAGGGTGTCATTCAAAATCGACATACCTTCCTTTAAGGTATTTATTTGCCCAATACATATATTGAGATTTAACTCATAATTACTT > NZ_CP009273/3574926‑3575098 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 28 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |