Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NZ_CP009273	1128071	1128149	79	2 [1]	[1] 2	flgE	flagellar hook protein FlgE

CGACGAAGTACGGCAGATAATTTAAGCCTTCACATTTCAGGAGTCAGTCATGGCCTTTTCTCAAGCGGTTAGCGGATTAAACGCTGCCGCCACCAACCTCGATGTTATTGGCAA  >  NZ_CP009273/1127981‑1128094                                                                                          |                         cgacgaAGTACGGCAGATAATTTAAGCCTTCACATTTCAGGAGTCAGTCATGGCCTTTTCTCAAGCGGTTAGCGGATTAAACGCTgccgc                          >  1:125118/1‑90 (MQ=255)                         aGCCTTCACATTTCAGGAGTCAGTCATGGCCTTTTCTCAAGCGGTTAGCGGATTAAACGCTGCCGCCACCAACCTCGATGTTATTGGcaa  <  2:125118/90‑1 (MQ=255)                                                                                          |                         CGACGAAGTACGGCAGATAATTTAAGCCTTCACATTTCAGGAGTCAGTCATGGCCTTTTCTCAAGCGGTTAGCGGATTAAACGCTGCCGCCACCAACCTCGATGTTATTGGCAA  >  NZ_CP009273/1127981‑1128094

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑