Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NZ_CP009273	1128071	1128149	79	2 [1]	[1] 2	flgE	flagellar hook protein FlgE

CACGGCCTCTTTTGCCGATATGTTTGCCGGTTCGAAAGTGGGACTGGGGGTAAAAGTTGCCGGTATCACTCAGGACTTTACCGATGGCACGACCACCAACACCGGG  >  NZ_CP009273/1128134‑1128239                 |                                                                                          cACGGCCTCTTTTGCCGATATGTTTGCCGGTTCGAAAGTGGGACTGGGGGTAAAAGTTGCCGGTATCACTCAGGACTTTACCGATGGCAc                  <  1:284588/90‑1 (MQ=255)                 gATATGTTTGCCGGTTCGAAAGGGGGACTGGGGGTAAAAGTTGGCGGTATCACTCAGGACTTTACCCGTGGCACCACCACCAAGACgggg  >  2:105414/1‑90 (MQ=255)                 |                                                                                          CACGGCCTCTTTTGCCGATATGTTTGCCGGTTCGAAAGTGGGACTGGGGGTAAAAGTTGCCGGTATCACTCAGGACTTTACCGATGGCACGACCACCAACACCGGG  >  NZ_CP009273/1128134‑1128239

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 5 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑