Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NZ_CP009273	1378817	1378826	10	3 [1]	[0] 2	ycjX	YcjX family protein

CTTTAAGGATACCTCCACGCTGTATCTGGAAATTGTGGATTATCCCGGCGAATGGTTGCTCGACCTGCCGATGCTGGCGCAGGACTATTT  >  NZ_CP009273/1378733‑1378822                                                                                    |       cTTTAAGGATACCTCCACGCTGTATCTGGAAATTGTGGATTATCCCGGCGAATGGTTGCTCGACCTGCCGATGCTGGCGCAGGACTAttt  <  2:45834/90‑1 (MQ=255)                              aaaTTGTGGATTATCCCGGCGAATGGTTGCTCGACCTGCCGATGCTGGCGCAGGa        <  1:67281/55‑1 (MQ=255)                              aaaTTGTGGATTATCCCGGCGAATGGTTGCTCGACCTGCCGATGCTGGCGCAGGa        >  2:67281/1‑55 (MQ=255)                                                                                    |       CTTTAAGGATACCTCCACGCTGTATCTGGAAATTGTGGATTATCCCGGCGAATGGTTGCTCGACCTGCCGATGCTGGCGCAGGACTATTT  >  NZ_CP009273/1378733‑1378822

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑