New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NZ_CP009273	= 2283591	NA (NA)	13 (0.810)	10/166	0.4	100%	intergenic (‑67/‑388)	BW25113_RS11435/narP	IS5‑like element IS5 family transposase/nitrate/nitrite response regulator protein NarP
	?	NZ_CP009273	= 3512441	0 (0.000)					intergenic (‑18/+383)	aroK/hofQ	shikimate kinase AroK/DNA uptake porin HofQ

CCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCc‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NZ_CP009273/2283531‑2283591 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CTTAGTAGTACCGAAAAAATGGCAGAGAAACGCAATATCTTTCTGGTTGGGCCTATGGGTGCCGGAAAAAGCACTATTGGGCG  <  NZ_CP009273/3512441‑3512359                                                                                                                                                  CCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGTAGTACCGAAAAAATGGCAGAGAA                                                        <  2:236802/90‑1         tacGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGTAGTACCGAAAAAATGGCAGAGAAACGCAATA                                                <  1:226114/87‑1          ATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGTAGTACCGAAAAAATGGCAGAGAAACGCAATAT                                               >  2:127244/1‑90          ATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGTAGTACCGAAAAAATGGCAGAGAAACGCAATAT                                               >  2:135234/1‑90               TCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGTAGTACCGAAAAAATGGCAGAGAAACGCAATATCTTTC                                          <  1:91189/90‑1               TCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGTAGTACCGAAAAAATGGCAGAGAAACGCAATATCTTTC                                          <  2:190443/90‑1               TCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGTAGTACCGAAAAAATGGCAGAGAAACGCAATATCTTTC                                          >  2:328159/1‑90                     TGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGTAGTACCGAAAAAATGGCAGAGAAACGCAATATCTTTCTGGTTG                                    <  1:401419/90‑1                     TGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGTAGTACCGAAAAAATGGCAGAGAAACGCAATATCTTTCTGGTTG                                    <  1:68269/90‑1                                           GGGACTTGTTCGCACCTTCCTTAGTAGTACCGAAAAAATGGCAGAGAAACGCAATATCTTTCTGGTTGGGCCTATGGGTGCCGGAAAAAG              >  2:284676/1‑90                                            GGACTTGTTCGCACCTTCCTTAGTAGTACCGAAAAAATGGCAGAGAAACGCAATATCTTTCTGGTTGGGCCTATGGGTGCCGGAAAAAGC             <  1:15157/90‑1                                              ACTTGTTCGCACCTTCCTTAGTAGTACCGAAAAAATGGCAGAGAAACGCAATATCTTTCTGGTTGGGCCTATGGGTGCCGGAAAAAGCAC           >  1:115551/1‑90                                                       CACCTTCCTTAGTAGTACCGAAAAAATGGCAGAGAAACGCAATATCTTTCTGGTTGGGCCTATGGGTGCCGGAAAAAGCACTATTGGGCG  >  1:409763/1‑90                                                                                                                                                  CCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCc‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NZ_CP009273/2283531‑2283591 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CTTAGTAGTACCGAAAAAATGGCAGAGAAACGCAATATCTTTCTGGTTGGGCCTATGGGTGCCGGAAAAAGCACTATTGGGCG  <  NZ_CP009273/3512441‑3512359

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.