New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NZ_CP009273	= 2283591	NA (NA)	13 (0.810)	10/166	0.4	100%	intergenic (‑67/‑388)	BW25113_RS11435/narP	IS5‑like element IS5 family transposase/nitrate/nitrite response regulator protein NarP
	?	NZ_CP009273	= 3512441	0 (0.000)					intergenic (‑18/+383)	aroK/hofQ	shikimate kinase AroK/DNA uptake porin HofQ

CGCCCAATAGTGCTTTTTCCGGCACCCATAGGCCCAACCAGAAAGATATTGCGTTTCTCTGCCATTTTTTCGGTACTACTAAGACTATTCGTTAATGATAAACCCGCTTCGCTCAGAGAGCGCCGCAGGACATGAACTGAAACCTCATAAG  >  NZ_CP009273/3512359‑3512509                                                                                   |                                                                     cgcCCAATAGTGCTTTTTCCGGCACCCATAGGCCCAACCAGAAAGATATTGCGTTTCTCTGCCATTTTTTCGGTACTACTAAGgaaggtg                                                               >  1:409763‑M2/1‑83 (MQ=255)          gTGCTTTTTCCGGCACCCATAGGCCCAACCAGAAAGATATTGCGTTTCTCTGCCATTTTTTCGGTACTACTAAGgaaggtgcgaacaagt                                                      >  1:115551‑M2/1‑74 (MQ=255)            gCTTTTTCCGGCACCCATAGGCCCAACCAGAAAGATATTGCGTTTCTCTGCCATTTTTTCGGTACTACTAAGgaaggtgcgaacaagtcc                                                    <  1:15157‑M2/90‑19 (MQ=255)             cTTTTTCCGGCACCCATAGGCCCAACCAGAAAGATATTGCGTTTCTCTGCCATTTTTTCGGTACTACTAAGgaaggtgcgaacaagtccc                                                   >  2:284676‑M2/1‑71 (MQ=255)                     gaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAAGACTAt                                                                 >  2:63764‑M2/59‑68 (MQ=255)                     gaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAAGACTAt                                                                 <  1:63764‑M2/10‑1 (MQ=255)                     gaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAAGACTATTCGTTAATGATAAACCCGCTTc                                           >  1:196607‑M2/59‑90 (MQ=255)                          aatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAAGACTATTCGTTAATGATAAACCCGCTTCGCTCa                                      >  1:195718‑M2/54‑90 (MQ=255)                                   cAACCAGAAAGATATTGCGTTTCTCTGCCATTTTTTCGGTACTACTAAGgaaggtgcgaacaagtccctgatatgagatcatgtttgtca                             <  1:68269‑M2/90‑42 (MQ=255)                                   cAACCAGAAAGATATTGCGTTTCTCTGCCATTTTTTCGGTACTACTAAGgaaggtgcgaacaagtccctgatatgagatcatgtttgtca                             <  1:401419‑M2/90‑42 (MQ=255)                                      gagtcagccgagaagaatttccccgcttattcgcaccttccCTAAGACTATTCGTTAATGATAAACCCGCTTCGCTCAGAGAGCGCCGCa                          <  1:421282‑M2/49‑1 (MQ=255)                                         gAAAGATATTGCGTTTCTCTGCCATTTTTTCGGTACTACTAAGgaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctgga                       <  1:91189‑M2/90‑48 (MQ=255)                                         gAAAGATATTGCGTTTCTCTGCCATTTTTTCGGTACTACTAAGgaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctgga                       <  2:190443‑M2/90‑48 (MQ=255)                                         gAAAGATATTGCGTTTCTCTGCCATTTTTTCGGTACTACTAAGgaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctgga                       >  2:328159‑M2/1‑43 (MQ=255)                                            gccgagaagaatttccccgcttattcgcaccttccCTAAGACTATTCGTTAATGATAAACCCGCTTCGCTCAGAGAGCGCCGCAGGAAAt                    >  2:399876‑M2/36‑90 (MQ=255)                                              atatTGCGTTTCTCTGCCATTTTTTCGGTACTACTAAGgaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccat                  >  2:127244‑M2/1‑38 (MQ=255)                                              atatTGCGTTTCTCTGCCATTTTTTCGGTACTACTAAGgaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccat                  >  2:135234‑M2/1‑38 (MQ=255)                                               tatTGCGTTTCTCTGCCATTTTTTCGGTACTACTAAGgaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccgta                 <  1:226114‑M2/90‑54 (MQ=255)                                                      atttccccgcttattcgcaccttccCTAAGACTATTCGTTAATGATAAACCCGCTTCGCTCAGAGAGCGCCGCAGGACATGAACTGAAAc          <  1:272319‑M2/65‑1 (MQ=255)                                                       ttCTCTGCCATTTTTTCGGTACTACTAAGgaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacaggg         <  2:236802‑M2/90‑62 (MQ=255)                                                            ccgcttattcgcaccttccCTAAGACTATTCGTTAATGATAAACCCGCTTCGCTCAGAGAGCGCCGCAGGACATGAACTGAAACCTCATa    <  1:123141‑M2/71‑1 (MQ=255)                                                              gcttattcgcaccttccCTAAGACTATTCGTTAATGATAAACCCGCTTCGCTCAGAGAGCGCCGCAGGACATGAACTGAAACCTCATAAg  <  2:171224‑M2/73‑1 (MQ=255)                                                                                   |                                                                     CGCCCAATAGTGCTTTTTCCGGCACCCATAGGCCCAACCAGAAAGATATTGCGTTTCTCTGCCATTTTTTCGGTACTACTAAGACTATTCGTTAATGATAAACCCGCTTCGCTCAGAGAGCGCCGCAGGACATGAACTGAAACCTCATAAG  >  NZ_CP009273/3512359‑3512509

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.