Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NZ_CP009273	1799372	1799406	35	3 [1]	[1] 2	espL1/BW25113_RS09005	type III secretion system effector EspL1/hypothetical protein

GTGACCATGTGCACAACGCCACCCGACGGCTGTAATAACAAAAAATCCCTTGATGCCTGTCCCTTTTGTTACACTCCGTTATCACGCACA  >  NZ_CP009273/1799311‑1799400                                                             |                              gTGACCATGTGCACAACGCCACCCGACGGCTGTAATAACAAAAAATCCCTTGATGCCTGTCCCTTTTGTTACACTCCGTTGTCACGcaca  <  2:126056/90‑1 (MQ=255)                aCGCCACCCGACGGCTGTAATAACAAAAAATCCCTTGATGCCTGTc                               <  1:328662/46‑1 (MQ=255)                aCGCCACCCGACGGCTGTAATAACAAAAAATCCCTTGATGCCTGTc                               >  2:328662/1‑46 (MQ=255)                                                             |                              GTGACCATGTGCACAACGCCACCCGACGGCTGTAATAACAAAAAATCCCTTGATGCCTGTCCCTTTTGTTACACTCCGTTATCACGCACA  >  NZ_CP009273/1799311‑1799400

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑