| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| JC | NZ_CP009273 | 4,267,801 | +CCG | coding (405/465 nt) | soxR → | redox‑sensitive transcriptional activator SoxR |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NZ_CP009273 | = 4267798 | 0 (0.000) | 16 (1.000) +CCG |
15/154 | 0.1 | 100% | coding (402/465 nt) | soxR | redox‑sensitive transcriptional activator SoxR |
| ? | NZ_CP009273 | 4267799 = | 0 (0.000) | coding (403/465 nt) | soxR | redox‑sensitive transcriptional activator SoxR | |||||
TTAGTGGCGCTGCGTGACGAACTGGACGGATGTATTGGTTGTGGCTGCCTTTCGCGCAGTGATTGCCCGTTGCGTAACCCGGGCGACCGCTTAGGAGAAGAAGGTACCGGCGCACGCTTGCTGGAAGATGAACAAAACTAAAGCGCCACAAGGGCGCT > NZ_CP009273/4267721‑4267878 | ttAGTGGCGCTGCGTGACGAACGGGAGGGATGTATTGGTTGTGGCTGCCTTTCGCGCAGTGATTGCCCGTTGCGTAAGccgccgggcgac < 1:275605‑M1/90‑13 (MQ=255) aGTGGCGCTGCGTGACGAACTGGACGGATGTATTGGTTGTGGCTGCCTTTCGCGCAGTGATTGCCCGTTGCGTAACccgccgggcgaccg > 2:163763‑M1/1‑76 (MQ=255) gcTGCGTGACGAACTGGACGGATGTATTGGTTGTGGCTGCCTTTCGCGCAGTGATTGCCCGTTGCGTAACccgccgggcgaccgcttagg > 2:406784‑M1/1‑70 (MQ=255) gCGTGACGAACTGGACGGATGTATTGGTTGTGGCTGCCTTTCGCGCAGTGATTGCCCGTTGCGTAACccgccgggcgaccgcttaggaga > 2:313609‑M1/1‑67 (MQ=255) gATGTATTGGTTGTGGCTGCCTTTCGCGCAGTGATTGCCCGTTGCGTAACccgccgggcgaccgcttaggagaagaaggtaccggcgcac > 1:188685‑M1/1‑50 (MQ=255) ttGTGGCTGCCTTTCGCGCAGTGATTGCCCGTTGCGTAACccgccgggcgaccgcttaggagaagaaggtaccggcgcacgcttgctgga > 2:385284‑M1/1‑40 (MQ=255) ttGTGGCTGCCTTTCGCGCAGTGATTGCCCGTTGCGTAACccgccgggcgaccgcttaggagaagaaggtaccggcgcacgcttgctgga > 2:438102‑M1/1‑40 (MQ=255) cTGCCTTTCGCGCAGTGATTGCCCGTTGCGTAACccgccgggcgaccgcttaggagaagaaggtaccggcgcacgcttgctggaagatga < 1:438102‑M1/90‑57 (MQ=255) gCCTTTCGCGCAGTGATTGCCCGTTGCGTAACccgccgggcgaccgcttaggagaagaaggtaccggcgcacgcttgctggaagatgaac > 1:60156‑M1/1‑32 (MQ=255) ccTTTCGCGCAGTGATTGCCCGTTGCGTAACccgccgggcgaccgcttaggagaagaaggtaccggcgcacgcttgctggaagatgaaca > 1:59109‑M1/1‑31 (MQ=255) tCGCGCAGTGATTGCCCGTTGCGTAACccgccgggcgaccgcttaggagaagaaggtaccggcgcacgcttgctggaagatgaacaaaac > 2:298113‑M1/1‑27 (MQ=255) gcAGTGATTGCCCGTTGCGTAACccgccgggcgaccgcttaggagaagaaggtaccggcgcacgcttgctggaagatgaacaaaactaaa < 2:135551‑M1/90‑68 (MQ=255) gcAGTGATTGCCCGTTGCGTAACccgccgggcgaccgcttaggagaagaaggtaccggcgcacgcttgctggaagatgaacaaaactaaa < 2:135552‑M1/90‑68 (MQ=255) cccGTTGCGTAACccgccgggcgaccgcttaggagaagaaggtaccggcgcacgcttgctggaagatgaacaaaactaaagcgccacaag < 2:212817‑M1/90‑78 (MQ=255) gTTGCGTAACccgccgggcgaccgcttaggagaagaaggtaccggcgcacgcttgctggaagatgaacaaaactaaagcgccacaagggc > 2:178981‑M1/1‑10 (MQ=255) gTTGCGTAACccgccgggcgaccgcttaggagaagaaggtaccggcgcacgcttgctggaagatgaacaaaactaaagcgccacaagggc > 1:102072‑M1/1‑10 (MQ=255) aCccgccgggcgaccgcttaggagaagaaggtaccggcgcacgcttgctggaagatgaacaaaactaa < 1:413790‑M1/68‑67 (MQ=255) aCccgccgggcgaccgcttaggagaagaaggtaccggcgcacgcttgctggaagatgaacaaaactaa > 2:413790‑M1/1‑2 (MQ=255) | TTAGTGGCGCTGCGTGACGAACTGGACGGATGTATTGGTTGTGGCTGCCTTTCGCGCAGTGATTGCCCGTTGCGTAACCCGGGCGACCGCTTAGGAGAAGAAGGTACCGGCGCACGCTTGCTGGAAGATGAACAAAACTAAAGCGCCACAAGGGCGCT > NZ_CP009273/4267721‑4267878 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |