| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| JC | NZ_CP009273 | 4,267,801 | +CCG | coding (405/465 nt) | soxR → | redox‑sensitive transcriptional activator SoxR |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NZ_CP009273 | = 4267798 | 0 (0.000) | 16 (1.000) +CCG |
15/154 | 0.1 | 100% | coding (402/465 nt) | soxR | redox‑sensitive transcriptional activator SoxR |
| ? | NZ_CP009273 | 4267799 = | 0 (0.000) | coding (403/465 nt) | soxR | redox‑sensitive transcriptional activator SoxR | |||||
ACCTTAGTGGCGCTGCGTGACGAACTGGACGGATGTATTGGTTGTGGCTGCCTTTCGCGCAGTGATTGCCCGTTGCGTAACCCGGGCGACCGCTTAGGAGAAGAAGGTACCGGCGCACGCTTGCTGGAAGATGAACAAAACTAAAGCGCCACAAGGGCGCTTTAGTTTGT > NZ_CP009273/4267718‑4267887 | ttagtggcgctgcgtgacgaacgggagggatgtattggttgtggctgcctttcgcgcagtgattgcccgttgcgtaagccgCCGGGCGAc < 1:275605‑M2/9‑1 (MQ=255) agtggcgctgcgtgacgaactggacggatgtattggttgtggctgcctttcgcgcagtgattgcccgttgcgtaacccgCCGGGCGACCg > 2:163763‑M2/80‑90 (MQ=255) gctgcgtgacgaactggacggatgtattggttgtggctgcctttcgcgcagtgattgcccgttgcgtaacccgCCGGGCGACCGCTTAgg > 2:406784‑M2/74‑90 (MQ=255) gcgtgacgaactggacggatgtattggttgtggctgcctttcgcgcagtgattgcccgttgcgtaacccgCCGGGCGACCGCTTAGgaga > 2:313609‑M2/71‑90 (MQ=255) gatgtattggttgtggctgcctttcgcgcagtgattgcccgttgcgtaacccgCCGGGCGACCGCTTAGGAGAAGAAGGTACCGGCGCAc > 1:188685‑M2/54‑90 (MQ=255) ttgtggctgcctttcgcgcagtgattgcccgttgcgtaacccgCCGGGCGACCGCTTAGGAGAAGAAGGTACCGGCGCACGCTTGCTGGa > 2:438102‑M2/44‑90 (MQ=255) ttgtggctgcctttcgcgcagtgattgcccgttgcgtaacccgCCGGGCGACCGCTTAGGAGAAGAAGGTACCGGCGCACGCTTGCTGGa > 2:385284‑M2/44‑90 (MQ=255) ctgcctttcgcgcagtgattgcccgttgcgtaacccgCCGGGCGACCGCTTAGGAGAAGAAGGTACCGGCGCACGCTTGCTGGAAGATGa < 1:438102‑M2/53‑1 (MQ=255) gcctttcgcgcagtgattgcccgttgcgtaacccgCCGGGCGACCGCTTAGGAGAAGAAGGTACCGGCGCACGCTTGCTGGAAGATGAAc > 1:60156‑M2/36‑90 (MQ=255) cctttcgcgcagtgattgcccgttgcgtaacccgCCGGGCGACCGCTTAGGAGAAGAAGGTACCGGCGCACGCTTGCTGGAAGATGAACa > 1:59109‑M2/35‑90 (MQ=255) tcgcgcagtgattgcccgttgcgtaacccgCCGGGCGACCGCTTAGGAGAAGAAGGTACCGGCGCACGCTTGCTGGAAGATGAACAAAAc > 2:298113‑M2/31‑90 (MQ=255) gcagtgattgcccgttgcgtaacccgCCGGGCGACCGCTTAGGAGAAGAAGGTACCGGCGCACGCTTGCTGGAAGATGAACAAAACTaaa < 2:135551‑M2/64‑1 (MQ=255) gcagtgattgcccgttgcgtaacccgCCGGGCGACCGCTTAGGAGAAGAAGGTACCGGCGCACGCTTGCTGGAAGATGAACAAAACTaaa < 2:135552‑M2/64‑1 (MQ=255) cccgttgcgtaacccgCCGGGCGACCGCTTAGGAGAAGAAGGTACCGGCGCACGCTTGCTGGAAGATGAACAAAACTAAAGCGCCACAAg < 2:212817‑M2/74‑1 (MQ=255) gttgcgtaacccgCCGGGCGACCGCTTAGGAGAAGAAGGTACCGGCGCACGCTTGCTGGAAGATGAACAAAACTAAAGCGCCACAAGGgc > 2:178981‑M2/14‑90 (MQ=255) gttgcgtaacccgCCGGGCGACCGCTTAGGAGAAGAAGGTACCGGCGCACGCTTGCTGGAAGATGAACAAAACTAAAGCGCCACAAGGgc > 1:102072‑M2/14‑90 (MQ=255) acccgCCGGGCGACCGCTTAGGAGAAGAAGGTACCGGCGCACGCTTGCTGGAAGATGAACAAAACTaa < 1:413790‑M2/63‑1 (MQ=255) acccgCCGGGCGACCGCTTAGGAGAAGAAGGTACCGGCGCACGCTTGCTGGAAGATGAACAAAACTaa > 2:413790‑M2/6‑68 (MQ=255) gCCGGGCGACCGCTTAGGAGAAGAAGGTACCGGCGCACGCTTGCTGGAAGATGAACAAAACTAAAGCGCCACAAGGGCGCTTTAGTTTGt > 1:205302‑M2/2‑90 (MQ=255) | ACCTTAGTGGCGCTGCGTGACGAACTGGACGGATGTATTGGTTGTGGCTGCCTTTCGCGCAGTGATTGCCCGTTGCGTAACCCGGGCGACCGCTTAGGAGAAGAAGGTACCGGCGCACGCTTGCTGGAAGATGAACAAAACTAAAGCGCCACAAGGGCGCTTTAGTTTGT > NZ_CP009273/4267718‑4267887 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |