New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NZ_CP009273	15391 =	NA (NA)	19 (1.010)	14/156	0.3	95.2%	intergenic (+93/‑54)	dnaJ/BW25113_RS00080	molecular chaperone DnaJ/IS4‑like element IS421 family transposase
	?	NZ_CP009273	= 454255	1 (0.050)					intergenic (+99/‑89)	clpX/lon	ATP‑dependent protease ATP‑binding subunit ClpX/endopeptidase La

CCTGCCCGTGGGCAGGCCTGGGTAAAAATAGGGTGCGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGATCACTCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCAGCA  >  NZ_CP009273/15311‑15474                                                                                 |                                                                                    ccTGCCCGTGGGCAGGCCTGGGTAAAAATAGGGTGCGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGATCACTCCCATAAGCGCTa                                                                            <  1:226041/90‑1 (MQ=255) ccTGCCCGTGGGCAGGCCTGGGTAAAAATAGGGTGCGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGATCACTCCCATAAGCGCTa                                                                            <  1:330127/90‑1 (MQ=255)  cTGCCCGTGGGCAGGCCTGGGTAAAAATAGGGTGCGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGGTCACTCCCCTAAACGCTaa                                                                           >  2:226041/1‑90 (MQ=255)        gTGGGCAGGCCTGGGTAAAAATAGGGTGCGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGATCACTCCCATAAGCGCTAACTTAAg                                                                     <  1:339722/90‑1 (MQ=255)                    gggTAAAAATAGGGTGCGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGGGGACTCCCCCAAAGGCTAACTTAAGGGGTggggggtt                                                         >  1:241464/1‑86 (MQ=255)                         aaaaTAGGGTGCGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGGTCACTCCCCTAAACGCTAACTTAAAGGGTGTGGGGTTATGcc                                                    >  2:603482/1‑90 (MQ=255)                              aGGGTGCGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGATCACTCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGata                                               <  1:393276/90‑1 (MQ=255)                                               tGCGAGCACCTGTAAAGTGGCGGGGATCACTCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGAt                              <  1:534189/90‑1 (MQ=255)                                                         tGTAAAGTGGCGGGGGGGACTCCCCCAAACGCCAACTTAAGGGGTTTGGGGTTACCCCCGATATGATTTTACGCGCCGGTGAATTAatct                    >  1:288119/1‑90 (MQ=255)                                                                 ggCGGGGGTCACTCCCCTAAGCGCTAACTTAAAGGGTGTGGGATTAAGCCTGATATGATTTAACGTGCCGATGAATTACTCTTACCATaa            >  2:497725/1‑90 (MQ=14)                                                                 ggCGGGGGTCACTCCCCTAAACGCTAACTTTAGGGGTGTGGGATTACGCCTGATATGATTTTAAGTGCCGGTGGATTAATCTCACCATaa            >  2:587620/1‑90 (MQ=9)                                                                           aCTCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCAGCa  >  1:265411/1‑90 (MQ=32)                                                                                 |                                                                                    CCTGCCCGTGGGCAGGCCTGGGTAAAAATAGGGTGCGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGATCACTCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCAGCA  >  NZ_CP009273/15311‑15474

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 5 ≤ ATCG/ATCG < 7 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.