| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NZ_CP009273 | 15391 = | NA (NA) | 19 (1.010) | 14/156 | 0.3 | 95.2% | intergenic (+93/‑54) | dnaJ/BW25113_RS00080 | molecular chaperone DnaJ/IS4‑like element IS421 family transposase |
| ? | NZ_CP009273 | = 454255 | 1 (0.050) | intergenic (+99/‑89) | clpX/lon | ATP‑dependent protease ATP‑binding subunit ClpX/endopeptidase La | |||||
CATACAATTAGTTAACCAAAAAGGGGGGATTTTATCTCCCCTTTAATTTTTCCTCTATTCTCGGCGTTGAATGTGGGGGAAACATCCCCATATACTGACGTACATGTTAATAGATGGCGTGAAGCACAGTCGTGTCATCTGATTACCTGGCGGAAATTAAACTAAGAGAGAGCT > NZ_CP009273/454168‑454341 | acgcgaggcatcgtcttaacgaggcaccgaggcgtcgcattcttcagatggttcaacccttaagttagcgcttatGGGGAAACATCCCCa < 2:172280‑M1/15‑1 (MQ=255) aggcatcgtcttaacgaggcaccgaggcgtcgcattcttcagatggttcaacccttaagttagcgcttatGGGGAAACATCCCCATATAc > 2:304348‑M1/71‑90 (MQ=255) ggcatcgtcttaacgaggcaccgaggcgtcgcattcttcagatggttcaacccttaagttagcgcttatGGGGAAACATCCCCATATACt > 2:318940‑M1/70‑90 (MQ=255) ggcatcgtcttaacgaggcaccgaggcgtcgcattcttcagatggttcaacccttaagttagcgcttatGGGGAAACATCCCCATATACt > 1:78405‑M1/70‑90 (MQ=255) tAGTTAACCAAAAAGGGGGGATTTTATCTCCCCTTTAATTTTTCCTCTATTCTCGGCGTTGAATGTGGGGGAAACATCCCataagcgctg > 2:602995‑M2/1‑80 (MQ=255) tAGTTAACCAAAAAGGGGGGATTTTATCTCCCCTTTAATTTTTCCTCTATTCTCGGCGTTGAATGTGGGGGAAACATCCCataagcgcta > 2:516117‑M2/1‑80 (MQ=255) tcttaacgaggcaccgaggcgtcgcattcttcagatggttcaacccttaagttagcgcttatGGGGAAACATCCCCATATACTGACGTAc > 1:130949‑M1/63‑90 (MQ=255) tcttaacgaggcaccgaggcgtcgcattcttcagatggttcaacccttaagttagcgcttatGGGGAAACATCCCCATATACTGACGTAc > 1:565950‑M1/63‑90 (MQ=255) tcttaacgaggcaccgaggcgtcgcattcttcagatggttcaacccttaagttagcgcttatGGGGAAACATCCCCATATACTGACGTAc > 1:55858‑M1/63‑90 (MQ=255) aCCAAAAAGGGGGGATTTTATCTCCCCTTTAATTTTTCCTCTATTCTCGGCGTTGAATGTGGGGGAAACATCCCataagcgctaacttaa < 2:584624‑M2/90‑17 (MQ=255) cAAAAAGGGGGGATTTTATCTCCCCTTTAATTTTTCCTCTATTCTCGGCGTTGAATGTGGGGGAAACATCCCataagcgctaacttaagg > 1:277639‑M2/1‑72 (MQ=255) aacgaggcaccgaggcgtcgcattcttcagatggttcaacccttaagttagcgcttatGGGGAAACATCCCCATATACTGACGTACATGt < 1:217513‑M1/32‑1 (MQ=255) ggggggATTTTATCTCCCCTTTAATTTTTCCTCTATTCTCGGCGTTGAATGTGGGGGAAACATCCCataagcgctaacttaagggttgtg > 1:242939‑M2/1‑66 (MQ=255) accgaggcgtcgcattcttcagatggttcaacccttaagttagcgcttatGGGGAAACATCCCCATATACTGACGTACATGTTAATAGAt > 1:74743‑M1/51‑90 (MQ=255) cgaggcgtcgcattcttcagatggttcaacccttaagttagcgcttatGGGGAAACATCCCCATATACTGACGTACATGTTAATAGATgg > 2:239384‑M1/49‑90 (MQ=255) ttATCTCCCCTTTAATTTTTCCTCTATTCTCGGCGTTGAATGTGGGGGAAACATCCCataagcgctaacttaagggttgtggtattacgc > 1:347008‑M2/1‑57 (MQ=255) ccccTTTAATTTTTCCTCTATTCTCGGCGTTGAATGTGGGGGAAACATCCCataagcgctaacttaagggttgtggtattacgcctgata < 1:574940‑M2/90‑40 (MQ=255) cattcttcagatggttcaacccttaagttagcgcttatGGGGAAACATCCCCATATACTGACGTACATGTTAATAGATGGCGTGAAGcac > 1:97770‑M1/39‑90 (MQ=255) cccTTTAATTTTTCCTCTATTCTCGGCGTTGAATGTGGGGGAAACATCCCataagcgctaacttaaggggtgtggtattacgcctgatat < 1:389883‑M2/90‑41 (MQ=255) ccTTTAATTTTTCCTCTATTCTCGGCGTTGAATGTGGGGGAAACATCCCataagcgctaacttaagg < 2:584562‑M2/67‑19 (MQ=255) ccTTTAATTTTTCCTCTATTCTCGGCGTTGAATGTGGGGGAAACATCCCataagcgctaacttaagg > 1:584562‑M2/1‑49 (MQ=255) ttcagatggttcaacccttaagttagcgcttatGGGGAAACATCCCCATATACTGACGTACATGTTAATAGATGGCGTGAAGCACAGTCg > 2:217513‑M1/34‑90 (MQ=255) ttCCTCTATTCTCGGCGTTGAATGTGGGGGAAACATCCCataagcgcta > 1:100029‑M2/1‑39 (MQ=255) ttCCTCTATTCTCGGCGTTGAATGTGGGGGAAACATCCCataagcgcta < 2:100029‑M2/49‑11 (MQ=255) ttcaacccttaagttagcgcttatGGGGAAACATCCCCATATACTGACGTACATGTTAATAGATGGCGTGa < 2:541958‑M1/47‑1 (MQ=255) ttcaacccttaagttagcgcttatGGGGAAACATCCCCATATACTGACGTACATGTTAATAGATGGCGTGa > 1:541958‑M1/25‑71 (MQ=255) ctATTCTTGGCGTTGAATGTGGGGGAAACATCCCataagcgcta < 2:337447‑M2/44‑11 (MQ=255) ctATTCTTGGCGTTGAATGTGGGGGAAACATCCCataagcgcta > 1:337447‑M2/1‑34 (MQ=255) cGGCGTTGAATGTGGGGGAAACATCCCataagcgctaacttaagggttgtggtattacgcctgatatgatttaacgtgccgatgaattac > 2:197118‑M2/1‑27 (MQ=255) gCGTTGAATGTGGGGGAAACATCCCataagcgctaacttaagggttgtggtattacgcctgatatgatttaacgtgccgatgaattactc > 2:116273‑M2/1‑25 (MQ=255) gCGTTGAATGTGGGGGAAACATCCCataagcgctaacttaagggttgtggtattacgcctgatatgatttaacgtgccgatgaattactc > 1:584624‑M2/1‑25 (MQ=255) tagcgcttatGGGGAAACATCCCCATATACTGACGTACATGTTAATAGATGGCGTGAAGCACAGTCGTGTCATCTGATTACCTGGCGGaa < 1:268456‑M1/80‑1 (MQ=255) ttGAATGTGGGGGAAACATCCCataagcgctaacttaagggttgtggtattacgcctgatatgatttaacgtgccgatgaatt > 1:186440‑M2/1‑22 (MQ=255) ttGAATGTGGGGGAAACATCCCataagcgctaacttaagggttgtggtattacgcctgatatgatttaacgtgccgatgaatt < 2:186440‑M2/83‑62 (MQ=255) tCCCataagcgctaacttaagggttgtggtattacgcctgatatgatttaacgtgccgatgaattactctcacgataactggtcagcaat < 1:187262‑M2/90‑87 (MQ=255) tCCCCATATACTGACGTACATGTTAATAGATGGCGTGAAGCACAGTCGTGTCATCTGATTACCTGGCGGAAATTAAACTAAGAGAGAGct < 2:248104/90‑1 (MQ=255) cataagcgctaacttaagggttgtggtattacgcctgatatgatttaacgtgccg < 2:103775‑M2/55‑55 (MQ=255) cataagcgctaacttaagggttgtggtattacgcctgatatgatttaacgtgccg > 1:103775‑M2/1‑1 (MQ=255) | CATACAATTAGTTAACCAAAAAGGGGGGATTTTATCTCCCCTTTAATTTTTCCTCTATTCTCGGCGTTGAATGTGGGGGAAACATCCCCATATACTGACGTACATGTTAATAGATGGCGTGAAGCACAGTCGTGTCATCTGATTACCTGGCGGAAATTAAACTAAGAGAGAGCT > NZ_CP009273/454168‑454341 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |