Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NZ_CP009273	4241449	4241450	2	3 [0]	[0] 3	BW25113_RS20970	SopA family protein

GTTATATCAATAACATTATAAAAATGATTGATACATTGCCAGATAATGCAATGATATTGAAATCCGTTCTGGCCGTAAAACTGGTGATGC  >  NZ_CP009273/4241451‑4241540 |                                                                                          gTTATATCAATAACATTATAAAAATGATTGATACATTGCCAGATAATGCAATGATATTGAAATCCGTTCTGGCCGTAAAACTGGTGATGc  <  1:497762/90‑1 (MQ=255) gTTATATCAATAACATTATAAAAATGATTGATACATTGCCAGATAATGCAATGATATTGAAATCCGTTCTGGCCGTAAAACTGGTGATGc  >  2:249274/1‑90 (MQ=255) gTTATATCAATAACATTATAAAAATGATTGATACATTGCCAGATAATGCAATGATATTGAAATCCGTTCTGGCCGTAAAACTGGTGATGc  >  2:497762/1‑90 (MQ=255) |                                                                                          GTTATATCAATAACATTATAAAAATGATTGATACATTGCCAGATAATGCAATGATATTGAAATCCGTTCTGGCCGTAAAACTGGTGATGC  >  NZ_CP009273/4241451‑4241540

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑