New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NZ_CP009273	= 278223	28 (1.300)	3 (0.150)	3/148	1.7	9.8%	coding (235/909 nt)	yagE	2‑keto‑3‑deoxygluconate aldolase
	?	NZ_CP009273	= 278229	30 (1.540)					coding (241/909 nt)	yagE	2‑keto‑3‑deoxygluconate aldolase
Rejected: Frequency below/above cutoff threshold.

GGGCAGCGGTGGCGAGTTCTCCCAGCTCGGCGCCGAAGAGCGTAAAGCCATTGCCCGCTTTGCTATCGATCATGTCGATCGTCGCGTGCCGGTGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NZ_CP009273/278129‑278223 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gccggtgcCGATCAGCACCGGCACGCGACGATCGACATGATCGATAGCAAAGCGGGCAATGGCTTTACGCTCTTCGGCGCCGAGCTGGGAGAAC  <  NZ_CP009273/278229‑278144                                                                                                                                                                                       GGGCAGCGGTGGCGAGTTCTCCCAGCTCGGCGCCGAAGAGCGTAAAGCCATTGCCCGCTTTGCTATCGATCATGTCGATCGTCGCGTGCC                                                                                             <  2:363892/90‑1  GGCAGCGGTGGCGAGTTCTCCCAGCTCGGCGCCGAAGAGCGTAAAGCCATTGCCCGCTTTGCTATCGATCATGTCGATCGTCGCGTGCCG                                                                                            >  1:553635/1‑90  GGCAGCGGTGGCGAGTTCTCCCAGCTCGGCGCCGAAGAGCGTAAAGCCATTGCCCGCTTTGCTATCGATCATGTCGATCGTCGCGTGCCG                                                                                            >  2:83424/1‑90    CAGCGGTGGCGAGTTCTCCCAGCTCGGCGCCGAAGAGCGTAAAGCCATTGCCCGCTTTGCTATCGATCATGTCGATCGTCGCGTGCCGGT                                                                                          <  1:107790/90‑1      GCGGTGGCGAGTTCTCCCAGCTCGGCGCCGAAGAGCGTAAAGCCATTGCCCGCTTTGCTATCGATCATGTCGATCGTCGCGTGCCGGTGC                                                                                        >  1:105468/1‑90      GCGGTGGCGAGTTCTCCCAGCTCGGCGCCGAAGAGCGTAAAGCCATTGCCCGCTTTGCTATCGATCATGTCGATCGTCGCGTGCCGGTGC                                                                                        <  1:595950/90‑1      GCGGTGGCGAGTTCTCCCAGCTCGGCGCCGAAGAGCGTAAAGCCATTGCCCGCTTTGCTATCGATCATGTCGATCGTCGCGTGCCGGTGC                                                                                        >  2:372970/1‑90                                                                        ATGTCGATCGTCGCGTGCCGGTGCCGATCAGCACCGGCACGCGACGATCGACATGATCGATAGCAAAGCGGGCAA                                     <  1:307218/75‑1                                                                        ATGTCGATCGTCGCGTGCCGGTGCCGATCAGCACCGGCACGCGACGATCGACATGATCGATAGCAAAGCGGGCAA                                     >  2:307218/1‑75                                                                                  TCGCGTGCCGGTGCCGATCAGCACCGGCACGCGGCGACCGACATGATCGATAGCAAAGCGGGCAATGGCCTTACGCTCTTCGGCGCCGAG            >  2:295379/1‑90                                                                                         CCGGTGCCGATCAGCACCGGCACGCGACGATCGACATGATCGATAGCAAAGCGGGCAATGGCTTTACGCTCTTCGGCGCCGAGCTGGGAG     <  2:219651/90‑1                                                                                         CCGGTGCCGATCAGCACCGGCACGCGACGATCGACATGATCGATAGCAAAGCGGGCAATGGCTTTACGCTCTTCGGCGCCGAGCTGGGAG     <  2:506068/90‑1                                                                                            GTGCCGATCAGCACCGGCACGCGACGATCGACATGATCGATAGCAAAGCGGGCAATGGCTTTACGCTCTTCGGCGCCGAGCTGGGAGAAC  <  1:118392/90‑1                                                                                                                                                                                       GGGCAGCGGTGGCGAGTTCTCCCAGCTCGGCGCCGAAGAGCGTAAAGCCATTGCCCGCTTTGCTATCGATCATGTCGATCGTCGCGTGCCGGTGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NZ_CP009273/278129‑278223 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gccggtgcCGATCAGCACCGGCACGCGACGATCGACATGATCGATAGCAAAGCGGGCAATGGCTTTACGCTCTTCGGCGCCGAGCTGGGAGAAC  <  NZ_CP009273/278229‑278144

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 18 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.