| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NZ_CP009273 | = 278223 | 28 (1.300) | 3 (0.150) | 3/148 | 1.7 | 9.8% | coding (235/909 nt) | yagE | 2‑keto‑3‑deoxygluconate aldolase |
| ? | NZ_CP009273 | = 278229 | 30 (1.540) | coding (241/909 nt) | yagE | 2‑keto‑3‑deoxygluconate aldolase | |||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
GCGGTGGCGAGTTCTCCCAGCTCGGCGCCGAAGAGCGTAAAGCCATTGCCCGCTTTGCTATCGATCATGTCGATCGTCGCGTGCCGGTGCTGATCGGCACCGGCGGCACCAACGCCCGGGAAACCATCGAACTCAGCCAGCACGCGCAGCAGGCGGGCGCGGACGGCATCGTGGTGATC > NZ_CP009273/278134‑278312 | gCGGTGGCGAGTTCTCCCAGCTCGGCGCCGAAGAGCGTAAAGCCATTGCCCGCTTTGCTATCGATCATGTCGATCGTCGCGTGCCGGTGC > 2:372970‑M1/1‑90 (MQ=255)gCGGTGGCGAGTTCTCCCAGCTCGGCGCCGAAGAGCGTAAAGCCATTGCCCGCTTTGCTATCGATCATGTCGATCGTCGCGTGCCGGTGC > 1:105468‑M1/1‑90 (MQ=255)gCGGTGGCGAGTTCTCCCAGCTCGGCGCCGAAGAGCGTAAAGCCATTGCCCGCTTTGCTATCGATCATGTCGATCGTCGCGTGCCGGTGC < 1:595950‑M1/90‑1 (MQ=255) ggCGAGTTCTCCCAGCTCGGCGCCGAAGAGCGTAAAGCCATTGCCCGCTTTGCTATCGATCATGTCGATCGTCGCGTGCCGGTGCTGATc < 2:295039/90‑1 (MQ=255) ggCGAGTTCTCCCAGCTCGGCGCCGAAGAGCGTAAAGCCATTGCCCGCTTTGCTATCGATCATGTCGATCGTCGCGTGCCGGTGCTGATc > 2:412773/1‑90 (MQ=255) gTTCTCCCAGCTCGGCGCCGAAGAGCGTAAAGCCATTGCCCGCTTTGCTATCGATCATGTCGATCGTCGCGTGCCGGTGCTGATCGgcac < 1:118392‑M2/90‑5 (MQ=255) ctcCCAGCTCGGCGCCGAAGAGCGTAAAGCCATTGCCCGCTTTGCTATCGATCATGTCGATCGTCGCGTGCCGGTGCTGATCGgcaccgg < 2:219651‑M2/90‑8 (MQ=255) ctcCCAGCTCGGCGCCGAAGAGCGTAAAGCCATTGCCCGCTTTGCTATCGATCATGTCGATCGTCGCGTGCCGGTGCTGATCGgcaccgg < 2:506068‑M2/90‑8 (MQ=255) cTCGGCGCCGAAGAGCGTAAGGCCATTGCCCGCTTTGCTATCGATCATGTCGGTCGCCGCGTGCCGGTGCTGATCGgcaccggcacgcga > 2:295379‑M2/1‑76 (MQ=255) cGGCGCCGAAGAGCGTAAAGCCATTGCCCGCTTTGCTATCGATCATGTCGATCGTCGCGTGCCGGTGCTGATCGGCACCGGCGGCACCaa > 1:401137/1‑90 (MQ=255) ggCGCCGAAGAGCGTAAAGCCATTGCCCGCTTTGCTATCGATCATGTCGATCGTCGCGTGCCGGTGCTGATCGGCACCGGCGGCACCAAc < 1:231547/90‑1 (MQ=255) gCGTAAAGCCATTGCCCGCTTTGCTATCGATCATGTCGATCGTCGCGTGCCGGTGCTGATCGGCACCGGCGGCACCAACGCCCGGGAAAc > 2:624434/1‑90 (MQ=255) aaaGCCATTGCCCGCTTTGCTATCGATCATGTCGATCGTCGCGTGCCGGTGCTGATCGGCACCGGCGGCACCAACGCCCGGGAAACCATc < 1:7414/90‑1 (MQ=255) aaGCCATTGCCCGCTTTGCTATCGATCATGTCGATCGTCGCGTGCCGGTGCTGATCGGCACCGGCGGCACCAACGCCCGGGAAACCATCg > 1:477126/1‑90 (MQ=255) ccATTGCCCGCTTTGCTATCGATCATGTCGATCGTCGCGTGCCGGTGCTGATCGGCACCGGCGGCAcc > 1:161058/1‑68 (MQ=255) ccATTGCCCGCTTTGCTATCGATCATGTCGATCGTCGCGTGCCGGTGCTGATCGGCACCGGCGGCAcc < 2:161058/68‑1 (MQ=255) aTTGCCCGCTTTGCTATCGATCATGTCGATCGTCGCGTGCCGGTGCTGATCGGCACCGGCGGCACCAACGCCCGGGAAACCATCGAACTc > 2:310338/1‑90 (MQ=255) aTTGCCCGCTTTGCTATCGATCATGTCGATCGTCGCGTGCCGGTGCTGATCGGCACCGGCGGCACCAACGCCCGGGAAACCATCGAACTc > 2:482639/1‑90 (MQ=255) ttGCCCGCTTTGCTATCGATCATGTCGATCGTCGCGTGCCGGTGCTGATCGgcaccggcacgcgacgatcgacat > 2:307218‑M2/1‑51 (MQ=255) ttGCCCGCTTTGCTATCGATCATGTCGATCGTCGCGTGCCGGTGCTGATCGgcaccggcacgcgacgatcgacat < 1:307218‑M2/75‑25 (MQ=255) cGCTTTGCTATCGATCATGTCGATCGTCGCGTGCCGGTGCTGATCGGCACCGGCGGCACCAACGCCCGGGAAACCATCGAACTcagccag > 1:26688/1‑90 (MQ=255) gCTTTGCTATCGATCATGTCGATCGTCGCGTGCCGGTGCTGATCGGCACCGGCGGCACCAACGCCCGGGAAACCATCGAACTcagccagc > 1:644145/1‑90 (MQ=255) cTATCGATCATGTCGATCGTCGCGTGCCGGTGCTGATCGGCACCGGCGGCACCAACGCCCGGGAAACCATCGAACTCAGCCAGCACgcgc < 1:30609/90‑1 (MQ=255) aTCGATCATGTCGATCGTCGCGTGCCGGTGCTGATCGGCACCGGCGGCACCAACGCCCGGGAAACCATCGAACTCAGCCAGCACGCgcag < 1:412773/90‑1 (MQ=255) gATCATGTCGATCGTCGCGTGCCGGTGCTGATCGGCACCGGCGGCACCAACGCCCGGGAAACCATCGAACTCAGCCAGCACGCGcagcag > 2:550694/1‑90 (MQ=255) aTGTCGATCGTCGCGTGCCGGTGCcgatcagcaccggcacgcgacgatcgacatgatcgatagcaaagcgggcaa < 1:307218‑M1/75‑52 (MQ=255) aTGTCGATCGTCGCGTGCCGGTGCcgatcagcaccggcacgcgacgatcgacatgatcgatagcaaagcgggcaa > 2:307218‑M1/1‑24 (MQ=255) aTGTCGATCGTCGCGTGCCGGTGCTGATCGGCACCGGCGGCACCAACg > 2:201616/1‑48 (MQ=255) aTGTCGATCGTCGCGTGCCGGTGCTGATCGGCACCGGCGGCACCAACg < 1:201616/48‑1 (MQ=255) aTGTCGATCGTCGCGTGCCGGTGCTGATCGGCACCGGCGGCACCAACGCCCGGGAAACCATc > 2:315235/1‑62 (MQ=255) aTGTCGATCGTCGCGTGCCGGTGCTGATCGGCACCGGCGGCACCAACGCCCGGGAAACCATc < 1:315235/62‑1 (MQ=255) gATCGTCGCGTGCCGGTGCTGATCGGCACCGGCGGCACCAACGCCCGGGAAACCAt < 2:356398/56‑1 (MQ=255) gATCGTCGCGTGCCGGTGCTGATCGGCACCGGCGGCACCAACGCCCGGGAAACCAt > 1:356398/1‑56 (MQ=255) cgtcgCGTGCCGGTGCTGATCGGCACCGGCGGCACCAACGCCCGGGAAACCATCGAACTCAGCCAGCACGCGCAGCAGGCGGGCGCGGAc < 2:105468/90‑1 (MQ=255) cgtcgCGTGCCGGTGCTGATCGGCACCGGCGGCACCAACGCCCGGGAAACCATCGAACTCAGCCAGCACGCGCAGCAGGCGGGCGCGGAc < 1:482639/90‑1 (MQ=255) tcgCGTGCCGGTGCcgatcagcaccggcacgcggcgaccgacatgatcgatagcaaagcgggcaatggccttacgctcttcggcgccgag > 2:295379‑M1/1‑14 (MQ=255) ccggtgccgatcagcaccggcacgcgacgatcgacatgatcgatagcaaagcgggcaatggctttacgctcttcggcgccgagctgggag < 2:219651‑M1/90‑84 (MQ=255) ccggtgccgatcagcaccggcacgcgacgatcgacatgatcgatagcaaagcgggcaatggctttacgctcttcggcgccgagctgggag < 2:506068‑M1/90‑84 (MQ=255) ggTGCTGATCGGCACCGGCGGCACCAACGCCCGGGAAACCATCGAACTCAGCCAGCACGCGCAGCAGGCGGGCGCGGACGGCATCgtggt > 1:8087/1‑90 (MQ=255) gtgccgatcagcaccggcacgcgacgatcgacatgatcgatagcaaagcgggcaatggctttacgctcttcggcgccgagctgggagaac < 1:118392‑M1/90‑87 (MQ=255) gTGCTGATCGGCACCGGCGGCACCAACGCCCGGGAAACCATCGAACTCAGCCAGCACGCGCAGCAGGCGGGCGCGGACGGCATCgtggtg > 1:108077/1‑90 (MQ=255) cTGATCGGCACCGGCGGCACCAACGCCCGGGAAACCATCGAACTCAGCCAGCACGCGCAGCAGGCGGGCGCGGACGGCATCGTGGTGATc < 2:293979/90‑1 (MQ=255) cTGATCGGCACCGGCGGCACCAACGCCCGGGAAACCATCGAACTCAGCCAGCACGCGCAGCAGGCGGGCGCGGACGGCATCGTGGTGATc < 2:401137/90‑1 (MQ=255) | GCGGTGGCGAGTTCTCCCAGCTCGGCGCCGAAGAGCGTAAAGCCATTGCCCGCTTTGCTATCGATCATGTCGATCGTCGCGTGCCGGTGCTGATCGGCACCGGCGGCACCAACGCCCGGGAAACCATCGAACTCAGCCAGCACGCGCAGCAGGCGGGCGCGGACGGCATCGTGGTGATC > NZ_CP009273/278134‑278312 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |