| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NZ_CP009273 | 3,631,242 | Δ66 bp | coding (241‑306/1500 nt) | pitA → | inorganic phosphate transporter PitA |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NZ_CP009273 | 3631242 | 3631307 | 66 | 21 [0] | [1] 22 | pitA | inorganic phosphate transporter PitA |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NZ_CP009273 | = 3631241 | 0 (0.000) | 13 (0.640) | 11/154 | 0.5 | 96.3% | coding (240/1500 nt) | pitA | inorganic phosphate transporter PitA |
| ? | NZ_CP009273 | 3631308 = | 1 (0.050) | coding (307/1500 nt) | pitA | inorganic phosphate transporter PitA | |||||
AGCTCGCCGTGGTTATGGCGGCGGTATTCAACTTTTTGGGTGTTTTGCTGGGTGGTCTGAGTGTTGCCTATGCCATTGTGCATATGCTGCCGACGGATCTGCTGCTTAATATGGGATCGTCTCATGGCCTTGCCATGGTGTTCTCTATGTTGCTGGCGGCGATTATCTGGAACCTGG > NZ_CP009273/3631153‑3631329 | aGCTCGCCGTGGTTATGGCGGCGGGATTCAACTTTTTGGGGGTTTTGCTGGGTGGTCTGAGTGTTGCCTATGCCATTGTGCATATGCTGg > 1:542901‑M1/1‑89 (MQ=255) cGCCGTGGTTATGGCGGCGGTATTCAACTTTTTGGGTGTTTTGCTGGGTGGTCTGAGTGTTGCCTATGCCATTGTGCATATGCTGgcggc < 1:374592‑M1/90‑6 (MQ=255) tGGTTATGGCGGCGGTATTCAACTTTTTGGGTGTTTTGCTGGGTGGTCTGAGTGTTGCCTATGCCATTGTGCATATGCTGgcggcgatt > 1:269975‑M1/1‑80 (MQ=255) tGGTTATGGCGGCGGTATTCAACTTTTTGGGTGTTTTGCTGGGTGGTCTGAGTGTTGCCTATGCCATTGTGCATATGCTGgcggcgatt < 2:269975‑M1/89‑10 (MQ=255) tGGCGGCGGTATTCAACTTTTTGGGTGTTTTGCTGGGTGGTCTGAGTGTTGCCTATGCCATTGTGCATATGCTGgcggcgattatctgga < 1:171340‑M1/90‑17 (MQ=255) ttttGGGTGTTTTGCTGGGTGGTCTGAGTGTTGCCTATGCCATTGTGCATATGCTGgcggcgattatctggaacctgggtacctggtact > 1:627513‑M1/1‑56 (MQ=255) aGTGTTGCCTATGCCATTGTGCATATGCTGgcggcgattatctggaacctgggtacct > 1:333133‑M1/1‑30 (MQ=255) aGTGTTGCCTATGCCATTGTGCATATGCTGgcggcgattatctggaacctgggtacct < 2:333133‑M1/58‑29 (MQ=255) aGTGTTGCCTATGCCATTGTGCATATGCTGgcggcgattatctggaacctggg > 2:553971‑M1/1‑30 (MQ=255) aGTGTTGCCTATGCCATTGTGCATATGCTGgcggcgattatctggaacctggg < 1:553971‑M1/53‑24 (MQ=255) ttGCCTATGCCATTGTGCATATGCTGgcggcgattatctggaacctgggtacctggtactttggtttacctgcatccagctctcatacgc > 2:287770‑M1/1‑26 (MQ=255) ttGTGCATATGCTGgcggcgattatctggaacctgggtacctggtactttggtttacctgcatccagctctcatacgctgattggcgcga > 1:318910‑M1/1‑14 (MQ=255) ttGTGCATATGCTGgcggcgattatctggaacctgggtacctggtactttggtttacctgcatccagctctcatacgctgattggcgcga > 1:576450‑M1/1‑14 (MQ=255) tGCTGgcggcgattatctggaacctgggtacctggtactttggtttacctgcatccagc < 1:376179‑M1/59‑55 (MQ=255) tGCTGgcggcgattatctggaacctgggtacctggtactttggtttacctgcatccagc > 2:376179‑M1/1‑5 (MQ=255) gCTGgcggcgattatctggaacctgggtacctggtactttggtttacctgcatccagctctcatacgctgattggcgcgatcatcgggat < 2:627513‑M1/90‑87 (MQ=255) gCTGgcggcgattatctggaacctgggtacctggtactttggtttacctgcatccagctctcatacgctgattggcgcgatcatcgggat < 1:242841‑M1/90‑87 (MQ=255) gCTGgcggcgattatctggaacctgggtacctggtactttggtttacctgcatccagctctcatacgctgattggcgcgatcatcgggat < 1:18213‑M1/90‑87 (MQ=255) tGgcggcgattatctggaacctgggtacctggtactttggtttacctgcatccagctctcatacgctgattggcgcgatcatcgggattg > 2:133664‑M1/1‑2 (MQ=255) tGgcggcgattatctggaacctgggtacctggtactttggtttacctgcatccagctctcatacgctgattggcgcgatcatcg > 1:453518‑M1/1‑2 (MQ=255) tGgcggcgattatctggaacctgggtacctggtactttggtttacctgcatccagctctcatacgctgattggcgcgatcatcg < 2:453518‑M1/84‑83 (MQ=255) | AGCTCGCCGTGGTTATGGCGGCGGTATTCAACTTTTTGGGTGTTTTGCTGGGTGGTCTGAGTGTTGCCTATGCCATTGTGCATATGCTGCCGACGGATCTGCTGCTTAATATGGGATCGTCTCATGGCCTTGCCATGGTGTTCTCTATGTTGCTGGCGGCGATTATCTGGAACCTGG > NZ_CP009273/3631153‑3631329 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |