| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NZ_CP009273 | 3,631,242 | Δ66 bp | coding (241‑306/1500 nt) | pitA → | inorganic phosphate transporter PitA |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NZ_CP009273 | 3631242 | 3631307 | 66 | 21 [0] | [1] 22 | pitA | inorganic phosphate transporter PitA |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NZ_CP009273 | = 3631241 | 0 (0.000) | 13 (0.640) | 11/154 | 0.5 | 96.3% | coding (240/1500 nt) | pitA | inorganic phosphate transporter PitA |
| ? | NZ_CP009273 | 3631308 = | 1 (0.050) | coding (307/1500 nt) | pitA | inorganic phosphate transporter PitA | |||||
CCTATGCCATTGTGCATATGCTGCCGACGGATCTGCTGCTTAATATGGGATCGTCTCATGGCCTTGCCATGGTGTTCTCTATGTTGCTGGCGGCGATTATCTGGAACCTGGGTACCTGGTACTTTGGTTTACCTGCATCCAGCTCTCATACGCTGATTGGCGCGATCATCGGGATTG > NZ_CP009273/3631219‑3631395 | agctcgccgtggttatggcggcgggattcaactttttgggggttttgctgggtggtctgagtgttgcctatgccattgtgcatatgctgg > 1:542901‑M2/90‑90 (MQ=255) cgccgtggttatggcggcggtattcaactttttgggtgttttgctgggtggtctgagtgttgcctatgccattgtgcatatgctggcggc < 1:374592‑M2/5‑1 (MQ=255) tggttatggcggcggtattcaactttttgggtgttttgctgggtggtctgagtgttgcctatgccattgtgcatatgctgGCGGCGAtt > 1:269975‑M2/81‑89 (MQ=255) tggttatggcggcggtattcaactttttgggtgttttgctgggtggtctgagtgttgcctatgccattgtgcatatgctgGCGGCGAtt < 2:269975‑M2/9‑1 (MQ=255) tggcggcggtattcaactttttgggtgttttgctgggtggtctgagtgttgcctatgccattgtgcatatgctgGCGGCGATTATCTGGa < 1:171340‑M2/16‑1 (MQ=255) ctgctgCTTAATATGGGATCGTCTCATGGCCTTGCCATGGCGTTCTCTATGTTGCTGGCGGCGGATAACTGGAACCGGGGCACCTGGTAc > 1:625923/1‑90 (MQ=255) ttttgggtgttttgctgggtggtctgagtgttgcctatgccattgtgcatatgctgGCGGCGATTATCTGGAACCTGGGTACCTGGTACt > 1:627513‑M2/57‑90 (MQ=255) agtgttgcctatgccattgtgcatatgctgGCGGCGATTATCTGGAACCTggg > 2:553971‑M2/31‑53 (MQ=255) agtgttgcctatgccattgtgcatatgctgGCGGCGATTATCTGGAACCTggg < 1:553971‑M2/23‑1 (MQ=255) agtgttgcctatgccattgtgcatatgctgGCGGCGATTATCTGGAACCTGGGTACCt > 1:333133‑M2/31‑58 (MQ=255) agtgttgcctatgccattgtgcatatgctgGCGGCGATTATCTGGAACCTGGGTACCt < 2:333133‑M2/28‑1 (MQ=255) ttgcctatgccattgtgcatatgctgGCGGCGATTATCTGGAACCTGGGTACCTGGTACTTTGGTTTACCTGCATCCAGCTCTCATACGc > 2:287770‑M2/27‑90 (MQ=255) ttgtgcatatgctgGCGGCGATTATCTGGAACCTGGGTACCTGGTACTTTGGTTTACCTGCATCCAGCTCTCATACGCTGATTGGCGCGa > 1:576450‑M2/15‑90 (MQ=255) ttgtgcatatgctgGCGGCGATTATCTGGAACCTGGGTACCTGGTACTTTGGTTTACCTGCATCCAGCTCTCATACGCTGATTGGCGCGa > 1:318910‑M2/15‑90 (MQ=255) tgctgGCGGCGATTATCTGGAACCTGGGTACCTGGTACTTTGGTTTACCTGCATCCAGc > 2:376179‑M2/6‑59 (MQ=255) tgctgGCGGCGATTATCTGGAACCTGGGTACCTGGTACTTTGGTTTACCTGCATCCAGc < 1:376179‑M2/54‑1 (MQ=255) gctgGCGGCGATTATCTGGAACCTGGGTACCTGGTACTTTGGTTTACCTGCATCCAGCTCTCATACGCTGATTGGCGCGATCATCGGGAt < 2:627513‑M2/86‑1 (MQ=255) gctgGCGGCGATTATCTGGAACCTGGGTACCTGGTACTTTGGTTTACCTGCATCCAGCTCTCATACGCTGATTGGCGCGATCATCGGGAt < 1:242841‑M2/86‑1 (MQ=255) gctgGCGGCGATTATCTGGAACCTGGGTACCTGGTACTTTGGTTTACCTGCATCCAGCTCTCATACGCTGATTGGCGCGATCATCGGGAt < 1:18213‑M2/86‑1 (MQ=255) tgGCGGCGATTATCTGGAACCTGGGTACCTGGTACTTTGGTTTACCTGCATCCAGCTCTCATACGCTGATTGGCGCGATCATCg > 1:453518‑M2/3‑84 (MQ=255) tgGCGGCGATTATCTGGAACCTGGGTACCTGGTACTTTGGTTTACCTGCATCCAGCTCTCATACGCTGATTGGCGCGATCATCg < 2:453518‑M2/82‑1 (MQ=255) tgGCGGCGATTATCTGGAACCTGGGTACCTGGTACTTTGGTTTACCTGCATCCAGCTCTCATACGCTGATTGGCGCGATCATCGGGATTg > 2:133664‑M2/3‑90 (MQ=255) | CCTATGCCATTGTGCATATGCTGCCGACGGATCTGCTGCTTAATATGGGATCGTCTCATGGCCTTGCCATGGTGTTCTCTATGTTGCTGGCGGCGATTATCTGGAACCTGGGTACCTGGTACTTTGGTTTACCTGCATCCAGCTCTCATACGCTGATTGGCGCGATCATCGGGATTG > NZ_CP009273/3631219‑3631395 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |