| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NZ_CP009273 | 1040657 = | 42 (0.760) | 4 (0.080) | 4/148 | 3.5 | 9.6% | coding (603/1140 nt) | gfcE | polysaccharide export protein |
| ? | NZ_CP009273 | 1040766 = | 38 (0.770) | coding (494/1140 nt) | gfcE | polysaccharide export protein | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
TGATGGTCAGAGGAATATTGGTAATCGGCTGCTGACCCGATTTGCTGACTTCGCCGGTGACGTACGCTTTTTGCGATCGGAACGCCGCGACGCTGACATCGACTTGCGGGCTTTCAATGACTGAATCGAGACGCGCTGTAATCTCGTTGCGTACCTGGGTAAGTGTTTTCCCGGCCACT > NZ_CP009273/1040677‑1040855 | tgatgGTCAGAGGAATATTGGTAATCGGCTGCTGACCCGATTTGCTGACTTCGCCGGTGACGTACGCTTTTTGCGATCGGAACGCCGCGa > 1:642505/1‑90 (MQ=255) tgGTCAGAGGAATATTGGTAATCGGCTGCTGACCCGATTTGCTGACTTCGCCGGTGACGTACGCTTTTTGCGATCGGAACGCCGAGACGc < 2:929469/90‑1 (MQ=255) ggTCAGAGGAATATTGGTAATCGGCTGCTGACCCGATTTGCTGACTTCGCCGGTGACGTACGCTTTTTGCGATCGGAACGCCGCGACGCt > 1:1017920/1‑90 (MQ=255) ggTCAGAGGAATATTGGTAATCGGCTGCTGACCCGATTTGCTGACTTCGCCGGTGACGTACGCTTTTTGCGATCGGAACGCCGCGACGCt > 1:1502505/1‑90 (MQ=255) cAGAGGAATATTGGTAATCGGCTGCTGACCCGATTTGCTGACTTCGCCGGTGACGTACGCTTTTTGCGATCGGAACGCCGCGACGCTGAc > 1:201635/1‑90 (MQ=255) cAGAGGAATATTGGTAATCGGCTGCTGACCCGATTTGCTGACTTCGCCGGTGACGTACGCTTTTTGCGATCGGAACGCCGCGACGCTGAc > 1:1189641/1‑90 (MQ=255) gagGAATATTGGTAATCGGCTGCTGACCCGATTTGCTGACTTCGCCGGTGACGTACGCTTTTTGCGATCGGAACGCCGCGACGCTGACAt > 1:1049594/1‑90 (MQ=255) atatTGGTAATCGGCTGCTGACCCGATTTGCTGACTTCGCCGGTGACGTACGCTTTTTGCGATCGGAACGCCGCGACGCTGACATCGACt > 1:1327948/1‑90 (MQ=255) atatTGGTAATCGGCTGCTGACCCGATTTGCTGACTTCGCCGGTGACGTACGCTTTTTGCGATCGGAACGCCGCGACGCTGACATCGACt > 2:773869/1‑90 (MQ=255) atatTGGTAATCGGCTGCTGACCCGATTTGCTGACTTCGCCGGTGACGTACGCTTTTTGCGATCGGAACGCCGCGACGCTGACATCGACt > 1:1399491/1‑90 (MQ=255) ttGGTAATCGGCTGCTGACCCGATTTGCTGACTTCGCCGGTGACGTACGCTTTTTGCGATCGGAACGCCGCGACGCTGACATCGACTTGc < 2:663521/90‑1 (MQ=255) ggTAATCGGCTGCTGACCCGATTTGCTGACTTCGCCGGTGACGTACGCTTTTTGCGATCGGAACGCCGCGACGCTGACATCGACTTGCgg > 1:1373359/1‑90 (MQ=255) ggTAATCGGCTGCTGACCCGATTTGCTGACTTCGCCGGTGACGTACGCTTTTTGCGATCGGAACGCCGCGACGCTGACATCGACTTGCgg > 1:1103954/1‑90 (MQ=255) ggTAATCGGCTGCTGACCCGATTTGCTGACTTCGCCGGTGACGTACGCTTTTTGCGATCGGAACGCCGCGACGCTGACATCGACTTGCgg > 2:1368169/1‑90 (MQ=255) tAATCGGCTGCTGACCCGATTTGCTGACTTCGCCGGTGACGTACGCTTTTTGCGATCGGAACGCCGCGACGCTGACATCGACTTGCGGGc < 2:1495408/90‑1 (MQ=255) tAATCGGCTGCTGACCCGATTTGCTGACTTCGCCGGTGACGTACGCTTTTTGCGATCGGAACGCCGCGACGCTGACATCGACTTGCGGGc < 2:1423416/90‑1 (MQ=255) tAATCGGCTGCTGACCCGATTTGCTGACTTCGCCGGTGACGTACGCTTTTTGCGATCGGAACGCCGCGACGCTGACATCGACTTGCGGGc < 2:201635/90‑1 (MQ=255) aaTCGGCTGCTGACCCGATTTGCTGACTTCGCCGGTGACGTACGCTTTTTGCGATCGGAACGCCGCGACGCTGACATCGACTTGCGGGCt > 2:574674/1‑90 (MQ=255) aaTCGGCTGCTGACCCGATTTGCTGACTTCGCCGGTGACGTACGC‑TTTTGCGATCGGAACGCCGCGACGCTGACATCGACTTGCGGGCtt > 1:1534490/1‑90 (MQ=255) tgctgACCCGATTTGCTGACTTCGCCGGTGACGTACGCTTTTTGCGATCGGAACGCCGCGACGCTGACATCGACTTGCGGGCTTTCAATg < 1:1259513/90‑1 (MQ=255) gctgACCCGATTTGCTGACTTCGCCGGTGACGTACGCTTTTTGCGATCGGAACGCCGCGACGCTGACATCGACTTGCGGGCTTTCAATGa > 1:44653/1‑90 (MQ=255) gctgACCCGATTTGCTGACTTCGCCGGTGACGTACGCTTTTTGCGATCGGAACGCCGCGACGCTGACATCGACTTGCGGGCTTTCAATGa > 2:1220593/1‑90 (MQ=255) ctgGCCCGATGTGCTGACTTCGCCGGTGACGTACGCTTTTTGCGATCGGAACGCCGCGACGCTGACATCGACTTGCGGGCTTTCAATGAc < 2:476144/90‑1 (MQ=255) ctgACCCGATTTGCTGACTTCGCCGGTGACGTACGCTTTTTGCGATCGGAACGCCGCGACGCTGACATCGACTTGCGGGCTTTCAATGAc < 1:817712/90‑1 (MQ=255) ctgACCCGATTTGCTGACTTCGCCGGTGACGTACGCTTTTTGCGATCGGAACGCCGCGACGCTGACATCGACTTGCGGGCTTTCAATGAc < 1:237835/90‑1 (MQ=255) ctgACCCGATTTGCTGACTTCGCCGGTGACGTACGCTTTTTGCGATCGGAACGCCGCGACGCTGACATCGACTTGCGGGCTTTCAATGAc < 1:1324051/90‑1 (MQ=255) gACCCGATTTGCTGACTTCGCCGGTGACGTACGCTTTTTGCGATCGGAACGCCGCGACGCTGACATCGACTTGCGGGCTTTCAATGACTg > 2:318017/1‑90 (MQ=255) tGCTGACTTCGCCGGTGACGTACGCTTTTTGCGATCGGAACGCCGCGACGCTGACATCGACTTGCGGGCTTTCAATGACTGAATCGAGAc < 1:1085579/90‑1 (MQ=255) gCTGACTTCGCCGGTGACGTACGCTTTTTGCGATCGGAACGCCGCGACGCTGACATCGACTTGCGGGCTTTCAATGACTGAATCGAGAcg < 2:44653/90‑1 (MQ=255) cTGACTTCGCCGGTGACGTACGCTTTTTGCGATCGGAACGCCGCGACGCTGACATCGACTTGCGGGCTTTCAATGACTGAATCGAGAcgc < 2:1470037/90‑1 (MQ=255) tGACTTCGCCGGTGACGTACGCTTTTTGCGATCGGAACGCCGCGACGCTGACATCGACTTGCGGGCTTTCAATGACTGAATCGAGAcgcg < 1:758102/90‑1 (MQ=255) gTGACGTACGCTTTTTGCGATCGGAACGCCGCGACGCTGACATCGACTTGCGGGCTTTCAATGACTGAATCGAGACGCGCTGTAATCTCg > 1:179507/1‑90 (MQ=255) aCGTACGCTTTTTGCGATCGGAACGCCGCGACGCTGACATCGACTTGCGGGCTTTCAATGACTGAATCGAGACGCGCTGTAATCTCGTTg < 1:574674/90‑1 (MQ=255) gTACGCTTTTTGCGATCGGAACGCCGCGACGCTGACATCGACTTGCGGGCTTTCAATGACTGAATCGAGACGCGCTGTAATCTCGTTGCg < 1:683038/90‑1 (MQ=255) aCGCTTTTTGCGATCGGAACGCCGCGACGCTGACATCGACTTGCGGGCTTTCAATGACTGAATCGAGACGCGCTGTAATCTCGTTGCGTa < 2:1017920/90‑1 (MQ=255) gCGATCGGAACGCCGCGACGCTGACATCGACTTGCGGGCTTTCAATGACTGAATCGAGACGCGCTGTAATCTCGTTGCGTACCTGGGTaa < 2:1502505/90‑1 (MQ=255) tCGGAACGCCGCGACGCTGACATCGACTTGCGGGCTTTCAATGACTGAATCGAGACTCGCTGTAATCTCGTTGCGTACCTGGGTAAgtgt > 1:1266891/1‑90 (MQ=255) tCGGAACGCCGCGACGCTGACATCGACTTGCGGGCTTTCAATGACTGAATCGAGACGCGCTGTAATCTCGTTGCGTACCTGGGTAAgtgt > 2:945503/1‑90 (MQ=255) ccgcGACGCTGACATCGACTTGCGGGCTTTCAATGACTGAATCGAGACGCGCTGTAATCTCg > 2:13962/1‑62 (MQ=255) ccgcGACGCTGACATCGACTTGCGGGCTTTCAATGACTGAATCGAGACGCGCTGTAATCTCg < 1:13962/62‑1 (MQ=255) cgcgACGCTGACATCGACTTGCGGGCTTTCAATGACTGAATCGAGACGCGCTGTAATCTCGTTGCGTACCTGGGTAAGTGTTTTCCCGGc < 2:1573931/90‑1 (MQ=255) gcgACGCTGACATCGACTTGCGGGCTTTCAATGACTGAATCGAGACGCGCTGTAATCTCGTTGCGTACCTGGGTAAGTGTTTTCCCGGcc < 2:179507/90‑1 (MQ=255) aCGCTGACATCGACTTGCGGGCTTTCAATGACTGAATCGAGACGCGCTGTAATCTCGTTGCGTACCTGGGTAAGTGTTTTCCCGGCCACt > 2:1143500/1‑90 (MQ=255) | TGATGGTCAGAGGAATATTGGTAATCGGCTGCTGACCCGATTTGCTGACTTCGCCGGTGACGTACGCTTTTTGCGATCGGAACGCCGCGACGCTGACATCGACTTGCGGGCTTTCAATGACTGAATCGAGACGCGCTGTAATCTCGTTGCGTACCTGGGTAAGTGTTTTCCCGGCCACT > NZ_CP009273/1040677‑1040855 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |