| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NZ_CP009273 | 2282398 = | NA (NA) | 115 (2.090) | 42/166 | 0.1 | 98.3% | pseudogene (3/2532 nt) | yejO | autotransporter YejO |
| ? | NZ_CP009273 | = 3629062 | 2 (0.040) | coding (862/1053 nt) | yhiM | DUF2776 domain‑containing protein | |||||
Only 100 of 119 total aligned reads displayed.
TTCTTATTTGCCTCGGAATGATCTGTTACAGCATATTCTCAAAAGTCTGGCTACTGGCACTGGTATGGAGACGTACCTGTTCGTTAGCCAACAGAATACCGATGATTCCCGTCTTCACCTGCCTGTTTTGCCTTTTCCTGGCATCGTTTCTTGCGGAAATGGCGCAGACCGACATG > NZ_CP009273/3628976‑3629151 | ttCTTATTTGCCTCGGAATGATCTGTTACAGCATATTCTCAAAAGTCTGGCTACTGGCACTGGTATGGAGACGTACCTGTTCGTTAGgga > 2:887657‑M2/1‑87 (MQ=255) tATTTGCCTCGGAATGATCTGTTACAGCATATTCTCAAAAGTCTGGCTACTGGCACTGGTATGGAGACGTACCTGTTCGTTAGggaaggt < 1:922518‑M2/90‑8 (MQ=255) tATTTGCCTCGGAATGATCTGTTACAGCATATTCTCAAAAGTCTGGCTACTGGCACTGGTATGGAGACGTACCTGTTCGTTAGggaa > 2:1076246‑M2/1‑83 (MQ=255) tATTTGCCTCGGAATGATCTGTTACAGCATATTCTCAAAAGTCTGGCTACTGGCACTGGTATGGAGACGTACCTGTTCGTTAGggaa < 1:1076246‑M2/87‑5 (MQ=255) gCCTCGGAATGATCTGTTACAGCATATTCTCAAAAGTCTGGCTACTGGCACTGGTATGGAGACGTACCTGTTCGTTAGggaaggtgcgaa < 1:1355751‑M2/90‑13 (MQ=255) gCCTCGGAATGATCTGTTACAGCATATTCTCAAAAGTCTGGCTACTGGCACTGGTATGGAGACGTACCTGTTCGTTAGggaaggtgcgaa < 2:1013978‑M2/90‑13 (MQ=255) tCGGAATGATCTGTTACAGCATATTCTCAAAAGTCTGGCTACTGGCACTGGTATGGAGACGTACCTGTTCGTTAGggaaggtgcgaataa < 2:1018285‑M2/90‑16 (MQ=255) gATCTGTTACAGCATATTCTCAAAAGTCTGGCTACTGGCACTGGTATGGAGACGTACCTGTTCGTTAGggaaggtgcgaataagcgggga > 2:836170‑M2/1‑68 (MQ=255) aTCTGTTACAGCATATTCTCAAAAGTCTGGCTACTGGCACTGGTATGGAGACGTACCTGTTCGTTAGggaaggtgcgaataagcggggaa < 1:337182‑M2/90‑24 (MQ=255) aTCTGTTACAGCATATTCTCAAAAGTCTGGCTACTGGCACTGGTATGGAGACGTACCTGTTCGTTAGggaaggtgcgaataagcggggaa < 2:102453‑M2/90‑24 (MQ=255) gTTACAGCATATTCTCAAAAGTCTGGCTACTGGCACTGGTATGGAGACGTACCTGTTCGTTAGggaaggtgcgaataagcggggaaattc < 1:330179‑M2/90‑28 (MQ=255) aGCATATTCTCAAAAGTCTGGCTACTGGCACTGGTATGGAGACGTACCTGTTCGTTAGggaaggtgcgaataagcggggaaattcttctc < 1:1201459‑M2/90‑33 (MQ=255) aGCATATTCTCAAAAGTCTGGCTACTGGCACTGGTATGGAGACGTACCTGTTCGTTAGggaaggtgcgaataagcggggaaattcttctc < 2:1420971‑M2/90‑33 (MQ=255) gCATATTCTCAAAAGTCTGGCTACTGGCACTGGTATGGAGACGTACCTGTTCGTTAGggaaggtgcgaataagcggggaaattcttctcg < 2:717942‑M2/90‑34 (MQ=255) gCATATTCTCAAAAGTCTGGCTACTGGCACTGGTATGGAGACGTACCTGTTCGTTAGggaaggtgcgaataagcggggaaattcttctcg < 2:257018‑M2/90‑34 (MQ=255) gCATATTCTCAAAAGTCTGGCTACTGGCACTGGTATGGAGACGTACCTGTTCGTTAGggaaggtgcgaataagcggggaaattcttctcg < 2:739859‑M2/90‑34 (MQ=255) gCATATTCTCAAAAGTCTGGCTACTGGCACTGGTATGGAGACGTACCTGTTCGTTAGgga < 2:1503999‑M2/60‑4 (MQ=255) gCATATTCTCAAAAGTCTGGCTACTGGCACTGGTATGGAGACGTACCTGTTCGTTAGgga > 1:1503999‑M2/1‑57 (MQ=255) atatTCTCAAAAGTCTGGCTACTGGCACTGGTATGGAGACGTACCTGTTCGTTAGggaaggtgcgaataagcggggaaattcttctcgtc > 2:211086‑M2/1‑55 (MQ=255) atatTCTCAAAAGTCTGGCTACTGGCACTGGTATGGAGACGTACCTGTTCGTTAGggaaggtgcgaataagcggggaaattcttctcggc < 1:1117883‑M2/90‑36 (MQ=255) atTCTCAAAAGTCTGGCTACTGGCACTGGTATGGAGACGTACCTGTTCGTTAGggaaggtgcgaataagcggggaaattcttctcggctg < 2:1149410‑M2/90‑38 (MQ=255) atTCTCAAAAGTCTGGCTACTGGCACTGGTATGGAGACGTACCTGTTCGTTAGggaaggtgcgaataagcggggaaattcttctcggctg < 2:1423991‑M2/90‑38 (MQ=255) atTCTCAAAAGTCTGGCTACTGGCACTGGTATGGAGACGTACCTGTTCGTTAGggaaggtgcgaataagcggggaaattcttctcggctg < 2:614290‑M2/90‑38 (MQ=255) atTCTCAAAAGTCTGGCTACTGGCACTGGTATGGAGACGTACCTGTTCGTTAGggaaggtgcgaataagcggggaaattcttctcggctg < 2:871947‑M2/90‑38 (MQ=255) atTCTCAAAAGTCTGGCTACTGGCACTGGTATGGAGACGTACCTGTTCGTTAGggaaggtgcgaataagcggggaaattcttctcggctg < 2:681086‑M2/90‑38 (MQ=255) tctcAAAAGTCTGGCTACTGGCACTGGTATGGAGACGTACCTGTTCGTTAGggaaggtgcgaataagcggggaaattcttctcggctgac > 1:1580057‑M2/1‑51 (MQ=255) tcAAAAGTCTGGCTACTGGCACTGGTATGGAGACGTACCTGTTCGTTAGggaaggtgcgaataagcggggaaattcttctcggctgactc > 2:922518‑M2/1‑49 (MQ=255) aaaaGTCTGGCTACTGGCACTGGTATGGAGACGTACCTGTTCGTTAGggaaggtgcgaataagcggggaaattcttctcggctgactcag < 1:1249601‑M2/90‑44 (MQ=255) aaaaGTCTGGCTACTGGCACTGGTATGGAGACGTACCTGTTCGTTAGggaaggtgcgaataagcggggaaattcttctcggctgactcag > 1:178068‑M2/1‑47 (MQ=255) aaaaGTCTGGCTACTGGCACTGGTATGGAGACGTACCTGTTCGTTAGggaaggtgcgaataagcggggaaattcttctcggctgactcag > 1:1466893‑M2/1‑47 (MQ=255) aaaaGTCTGGCTACTGGCACTGGTATGGAGACGTACCTGTTCGTTAGggaaggtgcgaataagcggggaaattcttctcggctgactcag > 1:303974‑M2/1‑47 (MQ=255) aaaaGTCTGGCTACTGGCACTGGTATGGAGACGTACCTGTTCGTTAGggaaggtgcgaataagcggggaaattcttctcggctgactcag > 1:466302‑M2/1‑47 (MQ=255) aaaaGTCTGGCTACTGGCACTGGTATGGAGACGTACCTGTTCGTTAGggaaggtgcgaata > 1:940679‑M2/1‑47 (MQ=255) aaGTCTGGCTACTGGCACTGGTATGGAGACGTACCTGTTCGTTAGggaaggtgcgaataagcggggaaattcttctcggctgactcagtc < 1:1203678‑M2/90‑46 (MQ=255) aaGTCTGGCTACTGGCACTGGTATGGAGACGTACCTGTTCGTTAGggaaggtgcgaataagcggggaaattcttctcggctgactcagtc > 2:612290‑M2/1‑45 (MQ=255) aaGTCTGGCTACTGGCACTGGTATGGAGACGTACCTGTTCGTTAGggaaggtgcgaataagcggggaaattcttctcggctgactcagtc > 2:357342‑M2/1‑45 (MQ=255) aaGTCTGGCTACTGGCACTGGTATGGAGACGTACCTGTTCGTTAGggaaggtgcgaataagcggggaaattcttctcggctgactcaatc > 2:388739‑M2/1‑45 (MQ=255) gTCTGGCTACTGGCACTGGTATGGAGACGTACCTGTTCGTTAGggaaggtgcgaataagcggggaaattcttctcggctgactcagtcat < 1:1242583‑M2/90‑48 (MQ=255) tCTGGCTACTGGCACTGGTATGGAGACGTACCTGTTCGTTAGggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatt > 2:855556‑M2/1‑42 (MQ=255) tCTGGCTACTGGCACTGGTATGGAGACGTACCTGTTCGTTAGggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatt < 1:454486‑M2/90‑49 (MQ=255) tCTGGCTACTGGCACTGGTATGGAGACGTACCTGTTCGTTAGggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatt < 1:1013098‑M2/90‑49 (MQ=255) cTGGCTACTGGCACTGGTATGGAGACGTACCTGTTCGTTAg > 2:1000511/1‑41 (MQ=255) cTGGCTACTGGCACTGGTATGGAGACGTACCTGTTCGTTAg < 1:1000511/41‑1 (MQ=255) cTGGCTACTGGCACTGGTATGGAGACGTACCTGTTCGTTAGggaaggtgcgaataagcggggaaattcttctcggctgactcagtcattt < 2:837893‑M2/90‑50 (MQ=255) cTGGCTACTGGCACTGGTATGGAGACGTACCTGTTCGTTAGggaaggtgcgaataagcggggaaattcttctcggctgactcagtcattt < 1:9194‑M2/90‑50 (MQ=255) cTGGCTACTGGCACTGGTATGGAGACGTACCTGTTCGTTAGggaaggtgcgaataagcggggaaattcttctcggctgac > 1:405091‑M2/1‑41 (MQ=255) cTGGCTACTGGCACTGGTATGGAGACGTACCTGTTCGTTAGggaaggtgcgaataagcggggaaattcttctcggctgac < 2:405091‑M2/80‑40 (MQ=255) tGGCTACTGGCACTGGTATGGAGACGTACCTGTTCGTTAGggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttc < 1:983489‑M2/90‑51 (MQ=255) cTACTGGCACTGGTATGGAGACGTACCTGTTCGTTAGggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatt > 2:835500‑M2/1‑37 (MQ=255) aCTGGCACTGGTATGGAGACGTACCTGTTCGTTAGggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttc < 1:244833‑M2/90‑56 (MQ=255) ggCACTGGTATGGAGACGTACCTGTTCGTTAGggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttc > 1:1423991‑M2/1‑32 (MQ=255) gCACTGGTATGGAGACGTACCTGTTCGTTAGggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttca > 1:837893‑M2/1‑31 (MQ=255) aCTGGTATGGAGACGTACCTGTTCGTTAGggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatg < 1:709888‑M2/90‑62 (MQ=255) aCTGGTATGGAGACGTACCTGTTCGTTAGggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatg < 1:696591‑M2/90‑62 (MQ=255) aCTGGTATGGAGACGTACCTGTTCGTTAGggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatg < 1:1364969‑M2/90‑62 (MQ=255) aCTGGTATGGAGACGTACCTGTTCGTTAGggaaggt < 1:115558‑M2/36‑8 (MQ=255) aCTGGTATGGAGACGTACCTGTTCGTTAGggaaggt > 2:115558‑M2/1‑29 (MQ=255) tGGAGACGTACCTGTTCGTTAGggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagc < 1:1304678‑M2/90‑69 (MQ=255) tGGAGACGTACCTGTTCGTTAGggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatt < 2:1515945‑M2/75‑54 (MQ=255) tGGAGACGTACCTGTTCGTTAGggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatt > 1:1515945‑M2/1‑22 (MQ=255) gaCGTACCTGTTCGTTAGggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgat < 1:1321940‑M2/90‑73 (MQ=255) cGTACCTGTTCGTTAGggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattt < 2:124793‑M2/90‑75 (MQ=255) cGTACCTGTTCGTTAGggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattt < 2:287253‑M2/90‑75 (MQ=255) cGTACCTGTTCGTTAGggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattt < 2:587862‑M2/90‑75 (MQ=255) cGTACCTGTTCGTTAGggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattt < 1:734644‑M2/90‑75 (MQ=255) cGTACCTGTTCGTTAGggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattt < 2:815279‑M2/90‑75 (MQ=255) cGTACCTGTTCGTTAGggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattt < 1:1581698‑M2/90‑75 (MQ=255) cGTACCTGTTCGTTAGggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattt < 1:1455580‑M2/90‑75 (MQ=255) cGTACCTGTTCGTTAGggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattt < 1:1010843‑M2/90‑75 (MQ=255) cGTACCTGTTCGTTAGggaaggtgcgaataagcggggaaattcttct > 2:1498733‑M2/1‑16 (MQ=255) cGTACCTGTTCGTTAGggaaggtgcgaataagcggggaaattcttct < 1:1498733‑M2/47‑32 (MQ=255) cGTACCTGTTCGTTAGCCAACAGAATACCGATGATTCCCGTCTTCACCTGCCTGTTTTGCCTTTTCCTGGCATCGTTTCTTGCGGaaa > 1:66592/1‑88 (MQ=255) gTACCTGTTCGTTAGggaaggtgcgaataagcggggaaattcttctcggctgcctcagtcatttcatttcttcatgtttgagccgatttt < 1:1347500‑M2/90‑76 (MQ=255) gTACCTGTTCGTTAGggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgatttt < 2:1399761‑M2/90‑76 (MQ=255) gTACCTGTTCGTTAGggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgatttt < 1:1437782‑M2/90‑76 (MQ=255) gTACCTGTTCGTTAGggaaggcgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgatttt < 2:1198894‑M2/90‑76 (MQ=255) tACCTGTTCGTTAGggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttt > 1:185434‑M2/1‑14 (MQ=255) aCCTGTTCGTTAGggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgatttttt < 1:687240‑M2/90‑78 (MQ=255) tGTTCGTTAGggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttctc < 2:314207‑M2/90‑81 (MQ=255) gTTCGTTAGggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttctcc < 1:863151‑M2/90‑82 (MQ=255) gTTCGTTAGggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttca > 2:879076‑M2/1‑9 (MQ=255) gTTCGTTAGggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttca < 1:879076‑M2/60‑52 (MQ=255) ttCGTTAGggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttctccc > 1:1213805‑M2/1‑8 (MQ=255) gTTAGggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttctcccgta < 1:1003640‑M2/90‑86 (MQ=255) gTTAGggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttctcccgta < 2:851089‑M2/90‑86 (MQ=255) gTTAGggaaggtgcgaataagcggggaaattcttctcggctgactc < 2:1238973‑M2/46‑42 (MQ=255) gTTAGggaaggtgcgaataagcggggaaattcttctcgactgactcagtcatttcatttcttcatgtttgagccgattttttctcccgta < 1:1038030‑M2/90‑86 (MQ=255) ttAGggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttctcccgtaa < 2:803071‑M2/90‑87 (MQ=255) tAGggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttctcccgtaaa > 1:226700‑M2/1‑3 (MQ=255) tAGggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttctcccgtaaa > 2:907871‑M2/1‑3 (MQ=255) tAGggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttctcccgtaaa > 1:1288502‑M2/1‑3 (MQ=255) tAGggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttctcccgtaaa < 2:1009640‑M2/90‑88 (MQ=255) tAGggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttctcccgtaaa < 2:1345639‑M2/90‑88 (MQ=255) tAGggaaggtgcgaataagcggggaaattcttctcggctgactcagtcaattcatttcttcatgtttgagccgattttttctcccgtaaa < 1:519509‑M2/90‑88 (MQ=255) aGggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttctcccgtaaat > 1:1611099‑M2/1‑2 (MQ=255) aGggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttctcccgtaaat > 1:139743‑M2/1‑2 (MQ=255) aGggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttctcccgtaaat > 1:614290‑M2/1‑2 (MQ=255) gggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttctcccgtaaatg < 2:417591‑M2/90‑90 (MQ=255) gggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttctcccgtaaatg < 1:585904‑M2/90‑90 (MQ=255) gggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttctcccgtaaatg < 2:1081437‑M2/90‑90 (MQ=255) | TTCTTATTTGCCTCGGAATGATCTGTTACAGCATATTCTCAAAAGTCTGGCTACTGGCACTGGTATGGAGACGTACCTGTTCGTTAGCCAACAGAATACCGATGATTCCCGTCTTCACCTGCCTGTTTTGCCTTTTCCTGGCATCGTTTCTTGCGGAAATGGCGCAGACCGACATG > NZ_CP009273/3628976‑3629151 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |