New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NZ_CP009273 2282398 =NA (NA)161 (2.350) 58/160 0.0 100% pseudogene (3/2532 nt) yejO autotransporter YejO
?NZ_CP009273 = 3627498 0 (0.000)pseudogene (321/1607 nt) BW25113_RS18065 YhiJ/YhiL family protein

Only 100 of 161 total aligned reads displayed.

CATTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NZ_CP009273/2282486‑2282398
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CTTTACAATTATACCAGACAATAACCATGTGTTAAAATTATCGTCTCCCATTACCGTTACTGTTGAGTGTAAGGGCGGTTATTATTTTA  <  NZ_CP009273/3627498‑3627410
                                                                                                                                                                                  
 ATTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCT                                                                                         >  1:1004866/1‑90
 ATTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCT                                                                                         >  2:1060220/1‑90
 ATTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCT                                                                                         <  1:366412/90‑1
 ATTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCT                                                                                         >  2:2891/1‑90
 ATTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCT                                                                                         >  2:621323/1‑90
 ATTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCT                                                                                         >  1:1555437/1‑90
 ATTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCT                                                                                         >  1:1492800/1‑90
 ATTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCT                                                                                         >  1:1317126/1‑90
 ATTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCT                                                                                         <  1:1482139/90‑1
 ATTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCT                                                                                         >  1:1449179/1‑90
 ATTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGGCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCT                                                                                         >  1:71213/1‑90
   TTACGGGAGAAAAAATCGGCTCAACCATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTTT                                                                                       <  1:1768574/90‑1
   TTACGGGAGAAAAAATCGGCTCAAACTTGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTTT                                                                                       <  1:868889/90‑1
   TTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTTT                                                                                       <  1:1026091/90‑1
   TTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTTT                                                                                       >  2:525843/1‑90
   TTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTTT                                                                                       <  2:1564792/90‑1
   TTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTTT                                                                                       <  2:1129604/90‑1
   TTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTTT                                                                                       <  1:1288879/90‑1
   TTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTTT                                                                                       <  1:1548503/90‑1
    TACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTTTA                                                                                      <  2:98537/90‑1
    TACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTTTA                                                                                      <  1:1872135/90‑1
    TACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTTTA                                                                                      <  2:343788/90‑1
    TACGGGAGAAAAAATCGGCTCAAACATCAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTTTA                                                                                      <  2:2108704/90‑1
      CGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTTTACA                                                                                    <  1:239435/90‑1
         GAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTTTACAATT                                                                                 >  2:1792172/1‑90
         GAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTTT                                                                                       <  2:1948157/84‑1
         GAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTTT                                                                                       >  1:501322/1‑84
           GAAAAAATCGGCTCAAACATGAAGATATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTTTACAATTAT                                                                               >  2:930254/1‑90
           GAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTTTACAATTAa                                                                               >  2:1444625/1‑89
              AAATTCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTTTACAATTATACC                                                                            <  2:516763/90‑1
              AAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTTTACAATTATACC                                                                            <  1:1081853/90‑1
              AAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTTTACAATTATACC                                                                            <  2:1568683/90‑1
              AAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTTTACAATTATACC                                                                            <  1:1792172/90‑1
              AAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTTTACAATTATACC                                                                            <  2:1864718/90‑1
               AAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTTTACAATTATACCA                                                                           <  1:1060220/90‑1
                AATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTTTACAATTATACCAG                                                                          <  1:1461161/90‑1
                AATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTTTACAATTATACCAG                                                                          <  2:950486/90‑1
                  TCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCCCCTTCCCTTTACAATTATACCAGAC                                                                        <  2:1012197/90‑1
                  TCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTTTACAATTATACCAGAC                                                                        >  2:501704/1‑90
                  TCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTTTACAATTATACCAGAC                                                                        <  1:670634/90‑1
                  TCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTTTACAATTATACCAGAC                                                                        >  2:646296/1‑90
                     GCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTTTA                                                                                      >  1:992360/1‑73
                         AAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCC                                                                                          >  1:1642567/1‑65
                          AACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTTTACAATTATACCAGACAATAACCA                                                                <  2:38267/90‑1
                          AACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTTTACAATTATACCAGACAATAACCA                                                                <  1:1960073/90‑1
                          AACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTTTACAATTATACCAGACAATAACCA                                                                <  2:564149/90‑1
                          AACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTTTACAATTATACCAGACAATAACCA                                                                <  1:1243809/90‑1
                           ACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTTTACAATTATACCAGACAATAACCgt                                                               <  2:918447/90‑3
                           ACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTTTACAATTATACCAGACAATAACCAT                                                               <  2:1252002/90‑1
                           ACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTTTACAATTATACCAGACAATAACCAT                                                               <  1:1008057/90‑1
                               GAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTTTACAATTATACCAGACAATAACCATGTGT                                                           >  1:855632/1‑90
                               GAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTTTACAATTATACCAGACAATAACCATGTGT                                                           >  2:600210/1‑90
                               GAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTTTACAAT                                                                                  <  1:984915/67‑1
                                  GAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTTTACAATTATACCAGACAATAACCATGTGTTAA                                                        <  1:646296/90‑1
                                      TGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTTTA                                                                                      <  2:291644/56‑1
                                      TGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTTTA                                                                                      >  1:291644/1‑56
                                         AATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTTTACAATTATACCAGACAATAACCATGTGTTAAAATTATC                                                 >  1:1697766/1‑90
                                           TGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTTTACAATTATACCAGACAATAACCATGTGTTAAAATTATCGT                                               <  1:837767/90‑1
                                           TGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTTTACAATTATACCAGACAATAACCATGTGTTAAAATTATCGT                                               <  1:1973788/90‑1
                                            GACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTTTACAATTATACCAGACAATAACCATGTGTTAAAATTATCGTC                                              <  1:38688/90‑1
                                            GACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTTTACAATTATACCAGACAA                                                                      >  1:1828019/1‑66
                                            GACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTTTACAATTATACCAGACAA                                                                      <  2:1828019/66‑1
                                             ACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTTTACAATTATACCAGACAATAACCATGTGTTAAAATTATCGTCT                                             <  1:1031011/90‑1
                                             ACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTTTACAATTATACCAGACAATAACCATGTGTTAAAATTATCGTCT                                             <  2:727135/90‑1
                                             ACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTTTACAATTATACCAGACAATAACCATGTGTTAAAATTATCGTCT                                             <  2:1843238/90‑1
                                               TGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTTTACAATTATACCAGACAATAACCATGTGTTAAAATTATCGTCTCC                                           >  2:283856/1‑90
                                                GAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTTTA                                                                                      >  1:1244109/1‑46
                                                 AGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTTTACAATTATACCAGACAATAACCATGTGTTAAAATTATCGTCTCCCA                                         <  1:763117/90‑1
                                                 AGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTTTACAATTATACCAGACAATAACCATGTGTTAAAATTATCGTCTCCCA                                         <  1:35956/90‑1
                                                  GTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTTT                                                                                       <  2:86528/43‑1
                                                   TCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTTTACAATTATACCAGACAATAACCATGTGTTAAAATTATCGTCTCCCATT                                       <  1:600210/90‑1
                                                    CAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTTTACAATTATACCAGACAATAACCATGTGTTAAAATTATCGTCTCCCATTA                                      >  2:1686108/1‑90
                                                    CAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTTTACAATTATACCAGACAATAACCATGTGTTAAAATTATCGTCTCCCATTA                                      <  2:769943/90‑1
                                                    CAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTTTACAATTATACCAGACAATAACCATGTGTTAAAATTATCGTCTCCCATTA                                      <  1:680064/90‑1
                                                    CAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTTTACAATTATACCAGACAATAACCATGTGTTAAAATTATCGTCTCCCATTA                                      <  2:1230115/90‑1
                                                      GCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTTTACAATTATACCAGACAATAACCATGTGTTAAAATTATCGTCTCCCATTACC                                    <  2:1126057/90‑1
                                                      GCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTTTACAATTATACCAGACAATAACCATGTGTTAAAATTATCGTCTCCCATTACC                                    <  2:1449179/90‑1
                                                        CGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTTTACAATTATACCAGACAATAACCATGTGTTAAAATTATCGTCTCCCATTACCGT                                  <  2:1317126/90‑1
                                                           GAAGAATTTCCCCGCTTATTCGCACCTTCCCTTTACAATTATACCAGACAATAACCATGTGTTAAAATTATCGTATCCCATTACCGTTAC                               <  2:490110/90‑1
                                                            AAGAATTTCCCCGCTTATTCGCACCTTCCCTTTACAATTATACCAGACAATAACCATGTGTTAAAATTATCGTCTCCCATTACCGTTACT                              >  2:1034828/1‑90
                                                               AATTTCCCCGCTTATTCGCACCTTCCCTTTACAATTATACCAGACAATAACCATGTGTTAAAATTATCGTCTCCCATTACCGTTACTGTT                           >  1:1942513/1‑90
                                                                ATTTCCCCGCTTATTCGCACCTTCCCTTTACAATTATACCAGACAATAACCATGTGTTAAAATTATCGTCTCCCATTACCGTTACTGTTG                          <  1:887523/90‑1
                                                                ATTTCCCCGCTTATTCGCACCTTCCCTTTACAATTATACCAGACAATAACCATGTGTTAAAATTATCGTCTCCCATTACCGTTACTGTTG                          <  1:498267/90‑1
                                                                ATTTCCCCGCTTATTCGCACCTTCCCTTTACAATTATACCAGACAATAACCATGTGTTAAAATTATCGTCTCCCATTACCGTTACTGTTG                          <  1:659917/90‑1
                                                                ATTTCCCCGCTTATTCGCACCTTCCCTTTACAATTATACCAGACAATAACCATGTGTTAAAATTATCGTCTCCCATTACCGTTACTGTTG                          <  1:645537/90‑1
                                                                ATTTCCCCGCTTATTCGCACCTTCCCTTTACAATTATACCAGACAATAACCATGTGTTAAAATTATCGTCTCCCATTACCGTTACTGTTG                          <  1:794856/90‑1
                                                                ATTTCCCCGCTTATTCGCACCTTCCCTTTACAATTATACCAGACAATAACCATGTGTTAAAATTATCGTCTCCCATTACCGTTACTGTTG                          <  1:1878310/90‑1
                                                                ATTTCCCCGCTTATTCGCACCTTCCCTTTACAATTATACCAGACAATAACCATGTGTTAAAATTATCGTCTCCCATTACCGTTACTGTTG                          <  1:1432693/90‑1
                                                                       CGCTTATTCGCACCTTCCCTTTACAATTATACCAGACAATAACCATGTGTTAAAATTATCGTCTCCCATTACCGTTACTGTTGAGTGTAA                   >  2:2086052/1‑90
                                                                       CGCTTATTCGCACCTTCCCTTTACAATTATACCAGACAATAACCATGTGTTAAAATTATCGTCTCCCATTACCGTTACTGTTGAGTGTAA                   <  1:1811721/90‑1
                                                                       CGCTTATTCGCACCTTCCCTTTACAATTATACCAGACAATAACAATGTGTTAAAATTATCGTCTCCCATTACCGTTACTGTTGAGTGTAA                   >  1:11596/1‑90
                                                                                GCACCTTCCCTTTACAATTATACCAGACAATAACCATGTGTTAAAATTATCGTCTCCCATTACCGTTACTGTTGAGTGTAAGGGCGGTTA          <  1:2086052/90‑1
                                                                                 CACCTTCCCTTTACAATTATACCAGACAATAACCATGTGTTAAAATTATCGTCTCCCATTACCGTTACTGTTGAGTGTAAGGGCGGTTAT         >  2:1379265/1‑90
                                                                                 CACCTTCCCTTTACAATTATACCAGACAATAACCATGTGTTAAAATTATCGTCTCCCATTACCGTTACTGTTGAGTGTAAGGGCGGTTAT         <  1:1379265/90‑1
                                                                                  ACCTTCCCTTTACAATTATACCAGACAATAACCATGTGTTAAAATTATCGTCTCCCATTACCGTTACTGTTGAGTGTAAGGGCGGTTATT        >  2:1805140/1‑90
                                                                                     TTCCCTTTACAATTATACCAGACAATAACCATGTGTTAAAATTATCGTCTCCCATTACCGTTACTGTTGAGTGTAAGGGCGGTTATTATT     >  1:203230/1‑90
                                                                                     TTCCCTTTACAATTATACCAGACAATAACCATGTGTTAAAATTATCGTCTCCCATTACCGTTACTGTTG                          >  2:702062/1‑69
                                                                                      TCCCTTTACAATTATACCAGACAATAACCATGTGTTAAAATTATCGTCTCCCATTACCGTTACTGTTGAGTGTAAGGGCGGTTATTATTT    >  2:195751/1‑90
                                                                                      TCCCTTTACAATTATACCAGACAATAACCATGTGTTAAAATTATCGTCTCCCATTACCGTTACTGTTGAGTGTAAGGGCGGTTATTATTT    <  1:283856/90‑1
                                                                                        CCTTTACAATTATCCCAGACAATAACCATGTGTTAAAATTATCGTCTCCCATTACCGTTACTGTTGAGTGTAAGGGCGGTTATTATTTTA  <  2:581453/90‑1
                                                                                                                                                                                  
CATTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NZ_CP009273/2282486‑2282398
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CTTTACAATTATACCAGACAATAACCATGTGTTAAAATTATCGTCTCCCATTACCGTTACTGTTGAGTGTAAGGGCGGTTATTATTTTA  <  NZ_CP009273/3627498‑3627410

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.