| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NZ_CP009273 | 2282398 = | NA (NA) | 161 (2.350) | 58/160 | 0.0 | 100% | pseudogene (3/2532 nt) | yejO | autotransporter YejO |
| ? | NZ_CP009273 | = 3627498 | 0 (0.000) | pseudogene (321/1607 nt) | BW25113_RS18065 | YhiJ/YhiL family protein | |||||
AAACCAGCTGGATATCTTTTTCCAGGACAACACCATCAACTGTCTCACCATACTCAACAGTTGATGCCAATGCTATGGGTGAATAT‑‑‑‑AAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGT > NZ_CP009273/2282310‑2282481 | aaaCCAGCTGGATATCTTTTTCCAGGACAACACCATCAACTGTCTCACCATACTCAACAGTTGATGCCAATGCTATGGGTGAATAT‑‑‑‑aagg < 2:1881613/90‑1 (MQ=255) aaCCAGCTGGATATCTTTTTCCAGGACAACACCATCAACTGTCTAACCATACTCAACAGTTGATGCCAATGCTATGGGTGAATAT‑‑‑‑aagga < 2:1703612/90‑1 (MQ=255) aCCAGCTGGATATCTTTTTCCAGGACAACACCATCAACTGTCTCACCATACTCAACAGTTGATGCCAATGCTATGGGTGAATAT‑‑‑‑aaggaa < 1:1298702/90‑1 (MQ=255) aCCAGCTGGATATCTTTTTCCAGGACAACACCATCAACTGTCTCACCATACTCAACAGTTGATGCCAATGCTATGGGTGAATAT‑‑‑‑aaggaa < 1:1932923/90‑1 (MQ=255) aCCAGCTGGATATCTTTTTCCAGGACAACACCATCAACTGTCTCACCATACTCAACAGTTGATGCCAATGCTATGGGTGAATAT‑‑‑‑aaggaa < 2:390032/90‑1 (MQ=255) ccAGCTGGATATCTTTTTCCAGTACAACACCATCAACTGTCTCACCATACTCAACAGTTGATGCCAATGCTATGGGTGAATAT‑‑‑‑aaggaag > 2:315409/1‑90 (MQ=255) ccAGCTGGATATCTTTTTCCAGGACAACATCATCAACTGTCTCACCATACTCAACAGTTGATGCCAATGCTATGGGTGAATAT‑‑‑‑aaggaag > 1:2126598/1‑90 (MQ=255) aGCTGGATATCTTTTTCCAGGACAACACCATCAACTGTCTCACCATACTCAACAGTTGATGCCAATGCTATGGGTGAATAT‑‑‑‑AAGGAAGGt > 2:1842504/1‑90 (MQ=255) cTTTTTCCAGGACAACACCATCAACTGTCTCACCATACTCAACAGTTGATGCCAATGCTATGGGTGAATAT‑‑‑‑AAGGAAGGTGCGAATAAGc < 2:1807455/90‑1 (MQ=255) aGGACAACACCATCAACTGTCTCACCATACTCAACAGTTGATGCCAATGCTATGGGTGAATAT‑‑‑‑AAGGAAGGTGCGAATAAGCGGGGAAAt < 1:389247/90‑1 (MQ=255) acacCATCAACTGTCTCACCATACTCAACAGTTGATGCCAATGCTATGGGTGAATAT‑‑‑‑aagga > 1:1890557/1‑62 (MQ=255) acacCATCAACTGTCTCACCATACTCAACAGTTGATGCCAATGCTATGGGTGAATAT‑‑‑‑aagga < 2:1890557/62‑1 (MQ=255) acacCATCAACTGTCTCACCATACTCAACAGTTGATGCCAATGCTATGGGTGAATAT‑‑‑‑AAGGAAGGTGCGAATAAGCGGGGAAATtcttct > 1:341753/1‑90 (MQ=255) acacCATCAACTGTCTCACCATACTCAACAGTTGATGCCAATGATATGGGTGAATAT‑‑‑‑aagga > 2:460276/1‑62 (MQ=255) acacCATCAACTGTCTCACCATACTCAACAGTTGATGCCAATGATATGGGTGAATAT‑‑‑‑aagga < 1:460276/62‑1 (MQ=255) aTCAACTGTCTCACCATACTCAACAGTTGATGCCAATGCTATGGGTGAATAT‑‑‑‑AAGGAAGGTGc > 2:409089/1‑63 (MQ=255) aTCAACTGTCTCACCATACTCAACAGTTGATGCCAATGCTATGGGTGAATAT‑‑‑‑AAGGAAGGTGc > 2:682868/1‑63 (MQ=255) aTCAACTGTCTCACCATACTCAACAGTTGATGCCAATGCTATGGGTGAATAT‑‑‑‑AAGGAAGGTGc < 1:409089/63‑1 (MQ=255) aTCAACTGTCTCACCATACTCAACAGTTGATGCCAATGCTATGGGTGAATAT‑‑‑‑AAGGAAGGTGc < 1:682868/63‑1 (MQ=255) aTCAACTGTCTCACCATACTCAACAGTTGATGCCAATGCTATGGGTGAATAT‑‑‑‑AAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCt > 1:1711807/1‑90 (MQ=255) aTCAACTGTCTCACCATACTCAACAGTTGATGCCAATGCTATGGGTGAATAT‑‑‑‑AAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCt > 2:2129936/1‑90 (MQ=255) aTCAACTGTCTCACCATACTCAACAGTTGATGCCAATGCTATGGGTGAATAT‑‑‑‑AAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCt > 2:690102/1‑90 (MQ=255) gTCTCACCATACTCAACAGTTGATGCCAATGCTATGGGTGAATAT‑‑‑‑AAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGGTGACTCAg > 1:1071156/1‑90 (MQ=255) tctcACCATACTCAACAGTTGATGCCAATGCTATGGGTGAATAT‑‑‑‑AAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGt > 2:1831918/1‑90 (MQ=255) ctcACCATACTCAACAGTTGATGCCAATGCTATGGGTGAATAT‑‑‑‑AAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGGTGACTCAGtc < 2:1071156/90‑1 (MQ=255) ctcACCATACTCAACAGTTGATGCCAATGCTATGGGTGAATAT‑‑‑‑AAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGtc < 1:2046357/90‑1 (MQ=255) ctcACCATACTCAACAGTTGATGCCAATGCTATGGGTGAATAT‑‑‑‑AAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGtc < 1:1365892/90‑1 (MQ=255) tccTCAACAGTTGATGCCAATGCTATGGGTGAATAT‑‑‑‑AAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGtcatttcat < 1:1270241/88‑1 (MQ=255) tACTCAACAGTTGATGCCAATGCTATGGGTGAATATAAGGAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGtcatt < 2:687886/90‑1 (MQ=18) aCTCAACAGTTGATGCCAATGCTATGGGTGAATAT‑‑‑‑AAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGtcatttcatt > 2:1190140/1‑90 (MQ=255) aCAGTTGATGCCAATGCTATGGGTGAATAT‑‑‑‑AAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATttcttc > 1:1915003/1‑90 (MQ=255) cAGTTGATGCCAATGCTATGGGTGAATAT‑‑‑‑aaggaa > 1:1905318/1‑35 (MQ=255) cAGTTGATGCCAATGCTATGGGTGAATAT‑‑‑‑aaggaa < 2:1905318/35‑1 (MQ=255) cAGTTGATGCCAATGCTATGGGTGAATAT‑‑‑‑AAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCa > 2:1135894/1‑90 (MQ=255) cAGTTGATGCCAATGCTATGGGTGAATAT‑‑‑‑AAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCa > 1:191972/1‑90 (MQ=255) gTTGATGCCAATGCTATGGGTGAATAT‑‑‑‑AAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATg > 1:1503023/1‑90 (MQ=255) gTTGATGCCAATGCTATGGGTGAATAT‑‑‑‑AAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATg > 1:553680/1‑90 (MQ=255) tGATGCCAATGCTATGGGTGAATAT‑‑‑‑AAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGtt > 2:1721768/1‑90 (MQ=255) tGATGCCAATGCTATGGGTGAATAT‑‑‑‑AAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGtt > 2:833701/1‑90 (MQ=255) ccAATGCTATGGGTGAATAT‑‑‑‑AAGGAATGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGc < 2:524509/90‑1 (MQ=255) aTGCTATGGGTGAATAT‑‑‑‑AAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCa > 2:472864/1‑61 (MQ=255) aTGCTATGGGTGAATAT‑‑‑‑AAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCa < 1:472864/61‑1 (MQ=255) aTGCTATGGGTGAATAT‑‑‑‑AAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGtcatttcat > 2:1735549/1‑71 (MQ=255) aTGCTATGGGTGAATAT‑‑‑‑AAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGtcatttcat < 1:1735549/71‑1 (MQ=255) aTGCTATGGGTGAATAT‑‑‑‑AAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGa > 1:1283404/1‑90 (MQ=255) aTGCTATGGGTGAATAT‑‑‑‑AAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGa > 2:1434821/1‑90 (MQ=255) tATGGGTGAATAT‑‑‑‑AAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGAtttt > 2:704865/1‑90 (MQ=255) aTGGGTGAATAT‑‑‑‑AAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTc > 2:892294/1‑55 (MQ=255) aTGGGTGAATAT‑‑‑‑AAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTc < 1:892294/55‑1 (MQ=255) aTGGGTGAATAT‑‑‑‑AAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGAttttt > 1:1741697/1‑90 (MQ=255) gggTGAATAT‑‑‑‑AAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTtc < 2:740633/90‑1 (MQ=255) ggTGAATAT‑‑‑‑AAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTtct > 1:240972/1‑90 (MQ=40) ggTGAATAT‑‑‑‑AAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTtct < 2:547534/90‑1 (MQ=40) tGAATAT‑‑‑‑AAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTcc < 2:1439295/90‑1 (MQ=38) gAATAT‑‑‑‑AAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTccc > 2:547059/1‑90 (MQ=37) gAATAT‑‑‑‑AAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTccc > 2:1614102/1‑90 (MQ=37) gatat‑‑‑‑AAGGAAGGGGCGAATAAGCGGGGCAATGCTTCCGGGCTGTAGCAGTGATTTCATTACTTCATGTTGAACCCGATTTTGTGTCCCg > 1:981290/2‑90 (MQ=2) aaTAT‑‑‑‑AAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGttt > 1:1694437/1‑71 (MQ=35) aaTAT‑‑‑‑AAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGttt < 2:1694437/71‑1 (MQ=35) aaTAT‑‑‑‑AAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCg > 2:329520/1‑90 (MQ=35) atat‑‑‑‑AAGGAAGGAGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGt > 1:866218/1‑90 (MQ=18) at‑‑‑‑aAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGtcatttca < 1:884799/55‑1 (MQ=31) at‑‑‑‑aAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGtcatttca > 2:884799/1‑55 (MQ=31) | AAACCAGCTGGATATCTTTTTCCAGGACAACACCATCAACTGTCTCACCATACTCAACAGTTGATGCCAATGCTATGGGTGAATAT‑‑‑‑AAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGT > NZ_CP009273/2282310‑2282481 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |