| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NZ_CP009273 | 2563838 = | 14 (0.200) | 5 (0.080) | 4/138 | 3.8 | 18.5% | coding (1273/1404 nt) | eutE | aldehyde dehydrogenase EutE |
| ? | NZ_CP009273 | 2563931 = | 32 (0.540) | coding (1180/1404 nt) | eutE | aldehyde dehydrogenase EutE | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
ACAAACGTACGCGCGCTGGTTACCCCTTCACCGGTTGGCGTGGTGATGGTCATGGTGGTCCAGCCTTCCCCGCCCAGCCCCAGCCCGGCAATGCACGGTCCGTTCTTAACGAAAATGCTGGTATCAATAGCATTCGCCATCTGGTTCATGTTTTCGATGTTGCGCGAGTGCA > NZ_CP009273/2563753‑2563924 | aCAAACGTACGCGCGCTGGTTACCCCTTCACCGGTTGGCGTGGTGATGGTCATGGTGGTCCAGCCTTCCCCGCCCAGCCCCAGCCCGGCa < 2:1784906/90‑1 (MQ=255) cGTACGCGCGCTGGTTACCCCTTCACCGGTTGGCGTGGTGATGGTCATGGTGGTCCAGCCTTCCCCGCCCAGCCCCAGCCCGGCAATGCa < 2:1792001/90‑1 (MQ=255) tCACCGGTTGGCGTGGTGATGGTCATGGTGGTCCAGCCTTCCCCGCCCAGCCCCAGACCGGCAATGCACGGTCCGTTCTTAACGAAAATg > 1:1031221/1‑90 (MQ=255) cATGGTGGTCCAGCCTTCCCCGCCCAGCCCCAGACCGGCAATGCACGGTCCGTTCTTAACGAAAATGCTGGTATCAATAGCATTCGCCAt < 2:1031221/90‑1 (MQ=255) tggtggTCCAGCCTTCCCCTCCCAGCCCCAGCCCGGCAATGCACGGTCCCTTCTTAACGAAAATGCTGGGATCAATAGCATTCGCCATCt > 1:1253221/1‑90 (MQ=255) gtCCAGCCTTCCCCGCCCAGCCCCAGCCCGGCAATGCACGGTCCGTTCTTAACGAAAATGc > 1:212495/1‑61 (MQ=255) gtCCAGCCTTCCCCGCCCAGCCCCAGCCCGGCAATGCACGGTCCGTTCTTAACGAAAATGc < 2:212495/61‑1 (MQ=255) gtCCAGCCTTCCCCGCCCAGCCCCAGCCCGGCAATGCACGGTCCGTTCTTAACGAAAATGCTGGTATCAATAGCATTCGCCATCTGGTTc > 2:1118404/1‑90 (MQ=255) gCCTTCCCCGCCCAGCCCCAGCCCGGCAATGCACGGTCCGTTCTTAACGAAAATGCTGGTATCAATAGCATTCGCCATCTGGTTCATGtt > 2:170652/1‑90 (MQ=255) cTTCCCCGCCCAGCCCCAGCCCGGCAATGCACGGTCCGTTCTTAACGAAAATGCTGGTATCAATAGCATTCGCCATc > 1:1100324/1‑77 (MQ=255) cTTCCCCGCCCAGCCCCAGCCCGGCAATGCACGGTCCGTTCTTAACGAAAATGCTGGTATCAATAGCATTCGCCATc < 2:1100324/77‑1 (MQ=255) gCCCAGCCCCAGCCCGGCAATGCACGGTCCGTTCTTAACGAAAATGCCGGTATCAATAGCATTCGCCATCTGGTTCATGTTTTCGATGtt > 2:1955455/1‑90 (MQ=255) ccagcccGGCAATGCACGGTCCGTTCTTAACGATAATGCTGGTa < 1:1716482/44‑1 (MQ=255) ccagcccGGCAATGCACGGTCCGTTCTTAACGAAAATGCTGGTa > 2:1716482/1‑44 (MQ=255) cggcGGCAATGCACGGTCCGTTCTTAACGAAAATGCTGGTATCAATAGCATTCGCCATCTGGTTCATGTTTTCGATGTTGCGCGAGTGCa > 2:725247/4‑90 (MQ=255) | ACAAACGTACGCGCGCTGGTTACCCCTTCACCGGTTGGCGTGGTGATGGTCATGGTGGTCCAGCCTTCCCCGCCCAGCCCCAGCCCGGCAATGCACGGTCCGTTCTTAACGAAAATGCTGGTATCAATAGCATTCGCCATCTGGTTCATGTTTTCGATGTTGCGCGAGTGCA > NZ_CP009273/2563753‑2563924 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |