New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NZ_CP009273 2563838 =14 (0.200)5 (0.080) 4/138 3.8 18.5% coding (1273/1404 nt) eutE aldehyde dehydrogenase EutE
?NZ_CP009273 2563931 = 32 (0.540)coding (1180/1404 nt) eutE aldehyde dehydrogenase EutE
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

GCACGGTCCGTTCTTAACGAAAATGCTGGTATCAATAGCATTCGCCATCTGGTTCATGTTTTCGATGTT‑‑GCGCGAGTGCATTGCCGCCGTGTGGTGGCAACCGCCTTCCAGTTTCACCGCTAGCGCAATGGCATCCGCCACGTTGGCGACGCGCACGACGGGCAACACCGGCAT  >  NZ_CP009273/2563845‑2564018
                                                                                        |                                                                                       
gCACGGTCCGTTCTTAACGAAAATGCTGGTATCAATAGCATTCGCCATCTGGTTCATGTTTTCGATGTT‑‑GCGCGAGTGCATTgccgcctg                                                                                      <  1:1849013/90‑3 (MQ=255)
     gTCCGTTCTTAACGAAAATGCTGGTATCAATAGCATTCGCCATCTGGTTCATGTTTTCGATGTT‑‑GCGCGAGTGCATTgccgcc                                                                                        >  2:1419386/1‑83 (MQ=255)
     gTCCGTTCTTAACGAAAATGCTGGTATCAATAGCATTCGCCATCTGGTTCATGTTTTCGATGTT‑‑GCGCGAGTGCATTgccgcc                                                                                        <  1:1419386/83‑1 (MQ=255)
     gTCCGTTCTTAACGAAAATGCTGGTATCAATAGCATTCGCCATCTGGTTCATGTTTTCGATGTT‑‑GCGCGAGTGCATTGCCGCCGTgtggt                                                                                 >  2:995128/1‑90 (MQ=255)
     gTCCGTTCTTAACGAAAATGCTGGTATCAATAGCATTCGCCATCTGGTTCATGTTTTCGATGTT‑‑GCGCGAGTGCATTGCCGCCGTgtggt                                                                                 >  2:1250440/1‑90 (MQ=255)
         gTTCTTAACGAAAATGCCGGTATCAATAGCATTCGCCATCTGGTTCATGTTTTCGATGTT‑‑GCGCGAGTGCATTGCCGCCGTGTGGTGGCa                                                                             <  1:1955455/90‑1 (MQ=255)
               aaCGAAAATGCTGGTATCAATAGCATTCGCCATCTGGTTCATGTTTTCGATGTT‑‑GCGCGAGTGCATTGCCGCCGTGTGGTGGCAACCGcc                                                                       >  1:1460069/1‑90 (MQ=255)
               aaCGAAAATGCTGGTATCAATAGCATTCGCCATCTGGTTCATGTTTTCGATGTT‑‑GCGCGAGTGCATTGCCGCCGTGTGGTGGCAACCGcc                                                                       >  1:466963/1‑90 (MQ=255)
                           ggTATCAATAGCATTCGCCATCTGGTTCATGTTTTCGATGTT‑‑GCGCGAGTGCATTGCCGCCGTGTGGTGGCAACCGCCTTCCAGTTTCAc                                                           >  1:910849/1‑90 (MQ=255)
                           ggTATCAATAGCATTCGCCATCTGGTTCATGTTTTCGATGTT‑‑GCGCGAGTGCATTGCCGCCGTGTGGTGGCAACCGCCTTCCAGTTTCAc                                                           >  2:2007403/1‑90 (MQ=255)
                           ggTATCAATAGCATTCGCCATCTGGTTCATGTTTTCGATGTT‑‑GCGCGAGTGCATTGCCGCCGTGTGGTGGCAACCGCCTTCCAGTTTCAc                                                           >  2:1951912/1‑90 (MQ=255)
                            gTATCAATAGCATTCGCCATCTGGTTCATGTTTTCGATGTT‑‑GCGCGAGTGCATTGCCGCCGTGTGGTGGCAACCGCCTTCCAGTTTCAcc                                                          >  2:1351111/1‑90 (MQ=255)
                            gTATCAATAGCATTCGCCATCTGGTTCATGTTTTCGATGTT‑‑GCGCGAGTGCATTGCCGCCGTGTGGTGGCAACCGCCTTCCAGTTTCAcc                                                          >  2:2001032/1‑90 (MQ=255)
                                cAATAGCATTCGCCATCTGGTTCATGTTTTCGATGTT‑‑GCGCGAGTGCATTGCCGCCgtg                                                                                     <  1:801911/59‑1 (MQ=255)
                                cAATAGCATTCGCCATCTGGTTCATGTTTTCGATGTT‑‑GCGCGAGTGCATTGCCGCCgtg                                                                                     >  2:801911/1‑59 (MQ=255)
                                cAATAGCATTCGCCATCTGGTTCATGTTTTCGATGTT‑‑GCGCGAGTGCATTGCCGCCGTGTGGTGGCAACCGCCTTCCAGTTTCACCGCTa                                                      >  2:759623/1‑90 (MQ=255)
                                     tcATTCGCCATCTGGTTCATGTTTTCGATGTT‑‑GCGCGAGTGCATTGCCGCCGTGTGGTGGCAACCGCCTTCCAGTTTCACCGCTAGCGCa                                                 >  1:1314692/2‑90 (MQ=255)
                                     gCATTCGCCATCTGGTTCATGTTTTCGATGTT‑‑GCGCGAGTGCATTGCCGCCGTGTGGTGGCAACCGCCTTCCAGTTTCACCGCTAGCGCa                                                 >  2:1043377/1‑90 (MQ=255)
                                       aTTCGCCATCTGGTTCATGTTTTCGATGTT‑‑GCGCGAGTGCATTGCCGCCGTGTGGTGGCAACCGCCTTCCAGTTTCACCGCTAGCGCAAt                                               >  2:1875792/1‑90 (MQ=255)
                                       aTTCGCCATCTGGTTCATGTTTTCGATGTT‑‑GCGCGAGTGCATTGCCGCCGTGTGGTGGCAACCGCCTTCCAGTTTCACCGCTAGCGCAAt                                               >  2:1005899/1‑90 (MQ=255)
                                          cGCCATCTGGTTCATGTTTTCGATGTTGCGCGCGAGTGCATTGCCGCCGTGTGGTGGCAACCGCCTTCCAGTTTCa                                                            <  2:1216602/76‑1 (MQ=255)
                                          cGCCATCTGGTTCATGTTTTCGATGTTGCGCGCGAGTGCATTGCCGCCGTGTGGTGGCAACCGCCTTCCAGTTTCa                                                            >  1:1216602/1‑76 (MQ=255)
                                          cGCCATCTGGTTCATGTTTTCGATGTT‑‑GCGCGAGTGCATTGCCGCCGTGTGGTGGCAACCGCCTTCCAGTTTCACCGCTAGCGCAATGGc                                            >  2:2138542/1‑90 (MQ=255)
                                               tCTGGTTCATGTTTTCGATGTT‑‑GCGCGAGTGCATTGCCGCCGTGTGGTGGCAACCGCCTTCCAGTTTCACCGCTAGCGCAATGGCATCCg                                       >  2:568340/1‑90 (MQ=255)
                                                  ggTTCATGTTTTCGATGTT‑‑GCGCGAGTGCATTGCCGCCGTGTGGTGGCAACCGCCTTCCAGTTTCACCGCTAGCGCAATGGCATCCGCCa                                    >  2:1978009/1‑90 (MQ=255)
                                                           tttCGATGTT‑‑GCGCGAGTGCATTGCCGCCGTGTGGTGGCAACCGCCTTCCAGTTTCACCGCTAGCGCAATGGCATCCGCCACGTTGGCGa                           <  1:2138770/90‑1 (MQ=255)
                                                               gATGTT‑‑GCGCGAGTGCATTGCCGCCGTGTGGTGGCAACCGCCTTCCAGTTTCACCGCTAGCGCAATGGCATCCGCCACGTTGGCGAcgcg                       <  1:1978009/90‑1 (MQ=255)
                                                                   tt‑‑GCGCGAGTGCATTGCCGCCGTGTGGTGGCGACCGCCTTCCAGTTTCACCGCTAGCGCAATGGCATCCGCCACGTTGGCGACGCGCacg                   >  2:134120/1‑90 (MQ=255)
                                                                       gcgcGAGTGCATTGCCGCCGTGTGGTGGCAACCGCCTTCCAGTTTCACCGCTAGCGCAATGGCATCCGCCACGTTGGCGACGCGCacgac                 >  2:1308678/1‑90 (MQ=255)
                                                                       gcgcGAGTGCATTGCCGCCGTGTGGTGGCAACCGCCTTCCAGTTTCACCGCTAGCGCAATGGCATCCGCCACGTTGGCGACGCGCacgac                 >  1:2132722/1‑90 (MQ=255)
                                                                           gAGTGCATTGCCGCCGTGTGGTGGCAACCGCCTTCCAGTTTCACCGCTAGCGCAATGGCATCCGCCACGTTGGCGACGCGCACGACGGGc             <  1:2001032/90‑1 (MQ=255)
                                                                           gAGTGCATTGCCGCCGTGTGGTGGCAACCGCCTTCCAGTTTCACCGCTAGCGCAATGGCATCCGCCACGTTGGCGACGCGCACGACGGGc             <  1:1351111/90‑1 (MQ=255)
                                                                                cATTGCCGCCGTGTGGTGGCAACCGCCTTCCAGTTTCACCGCTAGCGCAATGGCATCCGCCACGTTGGCGACGCGCACGACGGGCAacac        <  2:1282395/90‑1 (MQ=255)
                                                                                cATTGCCGCCGTGTGGTGGCAACCGCCTTCCAGTTTCACCGCTAGCGCAATGGCATCCGCCACGTTGGCGACGCGCACGACGGGCAacac        <  1:1005899/90‑1 (MQ=255)
                                                                                      cgccgTGTGGTGGCAACCGCCTTCCAGTTTCACCGCTAGCGCAATGGCATCCGCCACGTTGGCGACGCGCACGACGGGCAACACCGGcat  >  1:262160/1‑90 (MQ=255)
                                                                                      cgccgTGTGGTGGCAACCGACTTCCAGTTTCACCGCTAGCGCAATGGCATCCGCCACGTTGGCGACGCGCACGACGGGCAACACCGGcat  >  2:430365/1‑90 (MQ=255)
                                                                                        |                                                                                       
GCACGGTCCGTTCTTAACGAAAATGCTGGTATCAATAGCATTCGCCATCTGGTTCATGTTTTCGATGTT‑‑GCGCGAGTGCATTGCCGCCGTGTGGTGGCAACCGCCTTCCAGTTTCACCGCTAGCGCAATGGCATCCGCCACGTTGGCGACGCGCACGACGGGCAACACCGGCAT  >  NZ_CP009273/2563845‑2564018

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.