| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NZ_CP009273 | 2563838 = | 14 (0.200) | 5 (0.080) | 4/138 | 3.8 | 18.5% | coding (1273/1404 nt) | eutE | aldehyde dehydrogenase EutE |
| ? | NZ_CP009273 | 2563931 = | 32 (0.540) | coding (1180/1404 nt) | eutE | aldehyde dehydrogenase EutE | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
GCACGGTCCGTTCTTAACGAAAATGCTGGTATCAATAGCATTCGCCATCTGGTTCATGTTTTCGATGTT‑‑GCGCGAGTGCATTGCCGCCGTGTGGTGGCAACCGCCTTCCAGTTTCACCGCTAGCGCAATGGCATCCGCCACGTTGGCGACGCGCACGACGGGCAACACCGGCAT > NZ_CP009273/2563845‑2564018 | gCACGGTCCGTTCTTAACGAAAATGCTGGTATCAATAGCATTCGCCATCTGGTTCATGTTTTCGATGTT‑‑GCGCGAGTGCATTgccgcctg < 1:1849013/90‑3 (MQ=255) gTCCGTTCTTAACGAAAATGCTGGTATCAATAGCATTCGCCATCTGGTTCATGTTTTCGATGTT‑‑GCGCGAGTGCATTgccgcc > 2:1419386/1‑83 (MQ=255) gTCCGTTCTTAACGAAAATGCTGGTATCAATAGCATTCGCCATCTGGTTCATGTTTTCGATGTT‑‑GCGCGAGTGCATTgccgcc < 1:1419386/83‑1 (MQ=255) gTCCGTTCTTAACGAAAATGCTGGTATCAATAGCATTCGCCATCTGGTTCATGTTTTCGATGTT‑‑GCGCGAGTGCATTGCCGCCGTgtggt > 2:995128/1‑90 (MQ=255) gTCCGTTCTTAACGAAAATGCTGGTATCAATAGCATTCGCCATCTGGTTCATGTTTTCGATGTT‑‑GCGCGAGTGCATTGCCGCCGTgtggt > 2:1250440/1‑90 (MQ=255) gTTCTTAACGAAAATGCCGGTATCAATAGCATTCGCCATCTGGTTCATGTTTTCGATGTT‑‑GCGCGAGTGCATTGCCGCCGTGTGGTGGCa < 1:1955455/90‑1 (MQ=255) aaCGAAAATGCTGGTATCAATAGCATTCGCCATCTGGTTCATGTTTTCGATGTT‑‑GCGCGAGTGCATTGCCGCCGTGTGGTGGCAACCGcc > 1:1460069/1‑90 (MQ=255) aaCGAAAATGCTGGTATCAATAGCATTCGCCATCTGGTTCATGTTTTCGATGTT‑‑GCGCGAGTGCATTGCCGCCGTGTGGTGGCAACCGcc > 1:466963/1‑90 (MQ=255) ggTATCAATAGCATTCGCCATCTGGTTCATGTTTTCGATGTT‑‑GCGCGAGTGCATTGCCGCCGTGTGGTGGCAACCGCCTTCCAGTTTCAc > 1:910849/1‑90 (MQ=255) ggTATCAATAGCATTCGCCATCTGGTTCATGTTTTCGATGTT‑‑GCGCGAGTGCATTGCCGCCGTGTGGTGGCAACCGCCTTCCAGTTTCAc > 2:2007403/1‑90 (MQ=255) ggTATCAATAGCATTCGCCATCTGGTTCATGTTTTCGATGTT‑‑GCGCGAGTGCATTGCCGCCGTGTGGTGGCAACCGCCTTCCAGTTTCAc > 2:1951912/1‑90 (MQ=255) gTATCAATAGCATTCGCCATCTGGTTCATGTTTTCGATGTT‑‑GCGCGAGTGCATTGCCGCCGTGTGGTGGCAACCGCCTTCCAGTTTCAcc > 2:1351111/1‑90 (MQ=255) gTATCAATAGCATTCGCCATCTGGTTCATGTTTTCGATGTT‑‑GCGCGAGTGCATTGCCGCCGTGTGGTGGCAACCGCCTTCCAGTTTCAcc > 2:2001032/1‑90 (MQ=255) cAATAGCATTCGCCATCTGGTTCATGTTTTCGATGTT‑‑GCGCGAGTGCATTGCCGCCgtg < 1:801911/59‑1 (MQ=255) cAATAGCATTCGCCATCTGGTTCATGTTTTCGATGTT‑‑GCGCGAGTGCATTGCCGCCgtg > 2:801911/1‑59 (MQ=255) cAATAGCATTCGCCATCTGGTTCATGTTTTCGATGTT‑‑GCGCGAGTGCATTGCCGCCGTGTGGTGGCAACCGCCTTCCAGTTTCACCGCTa > 2:759623/1‑90 (MQ=255) tcATTCGCCATCTGGTTCATGTTTTCGATGTT‑‑GCGCGAGTGCATTGCCGCCGTGTGGTGGCAACCGCCTTCCAGTTTCACCGCTAGCGCa > 1:1314692/2‑90 (MQ=255) gCATTCGCCATCTGGTTCATGTTTTCGATGTT‑‑GCGCGAGTGCATTGCCGCCGTGTGGTGGCAACCGCCTTCCAGTTTCACCGCTAGCGCa > 2:1043377/1‑90 (MQ=255) aTTCGCCATCTGGTTCATGTTTTCGATGTT‑‑GCGCGAGTGCATTGCCGCCGTGTGGTGGCAACCGCCTTCCAGTTTCACCGCTAGCGCAAt > 2:1875792/1‑90 (MQ=255) aTTCGCCATCTGGTTCATGTTTTCGATGTT‑‑GCGCGAGTGCATTGCCGCCGTGTGGTGGCAACCGCCTTCCAGTTTCACCGCTAGCGCAAt > 2:1005899/1‑90 (MQ=255) cGCCATCTGGTTCATGTTTTCGATGTTGCGCGCGAGTGCATTGCCGCCGTGTGGTGGCAACCGCCTTCCAGTTTCa < 2:1216602/76‑1 (MQ=255) cGCCATCTGGTTCATGTTTTCGATGTTGCGCGCGAGTGCATTGCCGCCGTGTGGTGGCAACCGCCTTCCAGTTTCa > 1:1216602/1‑76 (MQ=255) cGCCATCTGGTTCATGTTTTCGATGTT‑‑GCGCGAGTGCATTGCCGCCGTGTGGTGGCAACCGCCTTCCAGTTTCACCGCTAGCGCAATGGc > 2:2138542/1‑90 (MQ=255) tCTGGTTCATGTTTTCGATGTT‑‑GCGCGAGTGCATTGCCGCCGTGTGGTGGCAACCGCCTTCCAGTTTCACCGCTAGCGCAATGGCATCCg > 2:568340/1‑90 (MQ=255) ggTTCATGTTTTCGATGTT‑‑GCGCGAGTGCATTGCCGCCGTGTGGTGGCAACCGCCTTCCAGTTTCACCGCTAGCGCAATGGCATCCGCCa > 2:1978009/1‑90 (MQ=255) tttCGATGTT‑‑GCGCGAGTGCATTGCCGCCGTGTGGTGGCAACCGCCTTCCAGTTTCACCGCTAGCGCAATGGCATCCGCCACGTTGGCGa < 1:2138770/90‑1 (MQ=255) gATGTT‑‑GCGCGAGTGCATTGCCGCCGTGTGGTGGCAACCGCCTTCCAGTTTCACCGCTAGCGCAATGGCATCCGCCACGTTGGCGAcgcg < 1:1978009/90‑1 (MQ=255) tt‑‑GCGCGAGTGCATTGCCGCCGTGTGGTGGCGACCGCCTTCCAGTTTCACCGCTAGCGCAATGGCATCCGCCACGTTGGCGACGCGCacg > 2:134120/1‑90 (MQ=255) gcgcGAGTGCATTGCCGCCGTGTGGTGGCAACCGCCTTCCAGTTTCACCGCTAGCGCAATGGCATCCGCCACGTTGGCGACGCGCacgac > 2:1308678/1‑90 (MQ=255) gcgcGAGTGCATTGCCGCCGTGTGGTGGCAACCGCCTTCCAGTTTCACCGCTAGCGCAATGGCATCCGCCACGTTGGCGACGCGCacgac > 1:2132722/1‑90 (MQ=255) gAGTGCATTGCCGCCGTGTGGTGGCAACCGCCTTCCAGTTTCACCGCTAGCGCAATGGCATCCGCCACGTTGGCGACGCGCACGACGGGc < 1:2001032/90‑1 (MQ=255) gAGTGCATTGCCGCCGTGTGGTGGCAACCGCCTTCCAGTTTCACCGCTAGCGCAATGGCATCCGCCACGTTGGCGACGCGCACGACGGGc < 1:1351111/90‑1 (MQ=255) cATTGCCGCCGTGTGGTGGCAACCGCCTTCCAGTTTCACCGCTAGCGCAATGGCATCCGCCACGTTGGCGACGCGCACGACGGGCAacac < 2:1282395/90‑1 (MQ=255) cATTGCCGCCGTGTGGTGGCAACCGCCTTCCAGTTTCACCGCTAGCGCAATGGCATCCGCCACGTTGGCGACGCGCACGACGGGCAacac < 1:1005899/90‑1 (MQ=255) cgccgTGTGGTGGCAACCGCCTTCCAGTTTCACCGCTAGCGCAATGGCATCCGCCACGTTGGCGACGCGCACGACGGGCAACACCGGcat > 1:262160/1‑90 (MQ=255) cgccgTGTGGTGGCAACCGACTTCCAGTTTCACCGCTAGCGCAATGGCATCCGCCACGTTGGCGACGCGCACGACGGGCAACACCGGcat > 2:430365/1‑90 (MQ=255) | GCACGGTCCGTTCTTAACGAAAATGCTGGTATCAATAGCATTCGCCATCTGGTTCATGTTTTCGATGTT‑‑GCGCGAGTGCATTGCCGCCGTGTGGTGGCAACCGCCTTCCAGTTTCACCGCTAGCGCAATGGCATCCGCCACGTTGGCGACGCGCACGACGGGCAACACCGGCAT > NZ_CP009273/2563845‑2564018 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |