| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NZ_CP009273 | 3256491 = | 68 (0.990) | 4 (0.070) | 3/138 | 4.2 | 5.9% | coding (529/1209 nt) | tdcD | propionate kinase |
| ? | NZ_CP009273 | 3256545 = | 68 (1.150) | coding (475/1209 nt) | tdcD | propionate kinase | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
AAGATGCGCCACAACCAGGCCGGAGTCATCTTCCGCCAGATTCAGCAGCGAATGTGCGCGCTGGGAAACATAGCGGTGCGACGTGCCGTGGAAACCATAACGGCGTACACCTAACTCTTCATAATATTTCCACGGCAGGCCGTATAAATAAGCTTCCGGAGCCATCGTCTGG > NZ_CP009273/3256408‑3256579 | aaGATGCGCCACAACCAGGCCGGAGTCATCTTCCGCCAGATTCAGCAGCGAATGTGCGCGCTGGGAAACATAGCGGTGCGACGTGCCGTg > 2:2092612/1‑90 (MQ=255) aGATGCGCCACAACCAGGCCGGAGTCATCTTCCGCCAGATTCAGCAGCGAATGTGCGCGCTGGGAAACATAGCGGTGCGACGTGCCGTgg > 2:830195/1‑90 (MQ=255) aGATGCGCCACAACCAGGCCGGAGTCATCTTCCGCCAGATTCAGCAGCGAATGTGCGCGCTGGGAAACATAGCGGTGCGACGTGCCGTgg < 1:2023183/90‑1 (MQ=255) aGATGCGCCACAACCAGGCCGGAGTCATCATCCGCCAGATTCAGCAGCGAATGTGCGCGCTGGGAAACATAGCGGTGCGACGTGCCGTgg < 2:1439896/90‑1 (MQ=255) gATGCGCCACAACCAGGCCGGAGTCATCTTCCGCCAGATTCAGCAGCGAATGTGCGCGCTGGGAAACATAGCGGTGCGACGTGCCGTGGa > 1:1599678/1‑90 (MQ=255) aTGCGCCACAACCAGGCCGGAGTCATCTTCCGCCAGATTCAGCAGCGAATGTGCGCGCTGGGAAACATAGCGGTGCGACGTGCCGTGGaa < 1:927253/90‑1 (MQ=255) aTGCGCCACAACCAGGCCGGAGTCATCTTCCGCCAGATTCAGCAGCGAATGTGCGCGCTGGGAAACATAGCGGTGCGACGTGCCGTGGaa < 2:1894067/90‑1 (MQ=255) aTGCGCCACAACCAGGCCGGAGTCATCTTCCGCCAGATTCAGCAGCGAATGTGCGCGCTGGGAAACATAGCGGTGCGACGTGCCGTGGaa < 2:1730651/90‑1 (MQ=255) gcCACAACCAGGCCGGAGTCATCTTCCGCCAGATTCAGCAGCGAATGTGCGCGCTGGGAAACATAGCGGTGCGACGTGCCGTGGAAACCa > 2:171887/1‑90 (MQ=255) gcCACAACCAGGCCGGAGTCATCTTCCGCCAGATTCAGCAGCGAATGTGCGCGCTGGGAAACATAGCGGTGCGACGTGCCGTGGAAACCa > 1:183795/1‑90 (MQ=255) cggccAGGCCGGAGTCATCTTCCGCCAGATTCAGCAGCGAATGTGCGCGCTGGGAAACATAGCGGTGCGACGTGCCGTGGAAACCATAAc < 1:756325/87‑1 (MQ=255) caACCAGGCCGGAGTCATCTTCCGCCAGATTCAGCAGCGAATGTGCGCGCTGGGAAACATAGCGGTGCGACGTGCCGTGGAAACCATAAc > 2:950336/1‑90 (MQ=255) caACCAGGCCGGAGTCATCTTCCGCCAGATTCAGCAGCGAATGTGCGCGCTGGGAAACATAGCGGTGCGACGTGCCGTGGAAACCATAAc < 1:1841303/90‑1 (MQ=255) caACCAGGCCGGAGTCATCTTCCGCCAGATTCAGCAGCGAATGTGCGCGCTGGGAAACATAGCGGTGCGACGTGCCGTGGAAACCATAAc < 2:1794798/90‑1 (MQ=255) caACCAGGCCGGAGTCATCTTCCGCCAGATTCAGCAGCGAATGTGCGCGCTGGGAAACATAGCGGTGCGACGTGCCGTGGAAACCATAAc < 1:1438536/90‑1 (MQ=255) ggCCGGAGTCATCTTCCGCCAGATTCAGCAGCGAATGTGCGCGCTGGGAAACATATCGGTGCGACGTGCCGTGGAAACCATAACGGCGTa < 2:1194733/90‑1 (MQ=255) ggCCGGAGTCATCTTCCGCCAGATTCAGCAGCGAATGTGCGCGCTGGGAAACATAGCGGTGCGACGTGCCGTGGAAACCATAACGGCGTa < 1:1796413/90‑1 (MQ=255) ggCCGGAGTCATCTTCCGCCAGATTCAGCAGCGAATGTGCGCGCTGGGAAACATAGCGGTGCGACGTGCCGTGGAAACCATAACGGCGTa < 2:1745566/90‑1 (MQ=255) ggCCGGAGTCATCTTCCGCCAGATTCAGCAGCGAATGTGCGCGCTGGGAAACATAGCGGTGCGACGTGCCGTGGAAACCATAACGGCGTa > 2:244229/1‑90 (MQ=255) gCCGGAGTCATCTTCCGCCAGATTCAGCAGCGAATGTGCGCGCTGGGAAACATAGCGGTGCGACGTGCCGTGTAAACCATAACGGCGTac < 1:1765441/90‑1 (MQ=255) gCCGGAGTCATCTTCCGCCAGATTCAGCAGCGAATGTGCGCGCTGGGAAACATAGCGGTGCGACGTGCCGTGGAAACCATAACGGCGTac < 1:661674/90‑1 (MQ=255) gCCGGAGTCATCTTCCGCCAGATTCAGCAGCGAATGTGCGAGCTGGGAAACATAGCGGTGAGACGTGCCGTGGAAACCATAACGGCGTac < 2:1891215/90‑1 (MQ=255) cGGAGTCATCTTCCGCCAGATTCAGCAGCGAATGTGCGCGCTGGGAAACATAGCGGTGCGACGTGCCGTGGAAACCATAACGGCGTacac < 1:830195/90‑1 (MQ=255) ggAGTCATCTTCCGCCAGATTCAGCAGCGAATGTGCGCGCTGGGAAACATAGCGGTGCGACGTGCCGTGGAAACCATAACGGCGTACAcc > 2:363135/1‑90 (MQ=255) gAGTCATCTTCCGCCAGATTCAGCAGCGAATGTGCGCGCTGGGAAACATAGCGGTGCGACGTGCCGTGGAAACCATAACGGCGTACACCt > 1:2096430/1‑90 (MQ=255) tCATCTTCCGCCAGATTCAGCAGCGAATGTGCGCGCTGGGTAACATAGCGGTGCGACGTGCCGTGGAAACCATAACGGCGTACACCTAAc < 2:1757259/90‑1 (MQ=255) tCATCTTCCGCCAGATTCAGCAGCGAATGTGCGCGCTGGGAAACATAGCGGTGCGACGTGCCGTGGAAACCATAACGGCGTACACCTAAc < 2:1599678/90‑1 (MQ=255) tCATCTTCCGCCAGATTCAGCAGCGAATGTGCGCGCTGGGAAACATAGCGGTGCGACGTGCCGTGGAAACCATAACGGCGTACACCTAAc < 2:967222/90‑1 (MQ=255) tCATCTTCCGCCAGATTCAGCAGCGAATGTGCGCGCTGGGAAACATAGCGGTGCGACGTGCCGTGGAAACCATAACGGCGTACACCTAAc < 1:2092612/90‑1 (MQ=255) tCATCTTCCGCCAGATTCAGCAGCGAATGTGCGCGCTGGGAAACATAGCGGTGCGACGTGCCGTGGAAACCATAACGGCGTACACCTAAc < 1:1927019/90‑1 (MQ=255) aTCTTCCGCCAGATTCAGCAGCGAATGTGCGCGCTGGGAAACATAGCGGTGCGACGTGCCGTGGAAACCATAACGGCGTa < 2:1316619/80‑1 (MQ=255) aTCTTCCGCCAGATTCAGCAGCGAATGTGCGCGCTGGGAAACATAGCGGTGCGACGTGCCGTGGAAACCATAACGGCGTa > 1:1316619/1‑80 (MQ=255) aTCTTCCGCCAGATTCAGCAGCGAATGTGCGCGCTGGGAAACATAGCGGTGCGACGTGCCGTGGAAACCATAACGGCGTACACCTAActc < 2:1724914/90‑1 (MQ=255) ttCCGCCAGATTCAGCAGCGAATGTGCGCGCTGGGAAACATAGCGGTGCGATGTGCCGTGGAAACCATAACGGCGTACACCTAACCCTTc < 1:349770/90‑1 (MQ=255) cAGATTCAGCAGCGAATGTGCGCGCTGGGAAACATAGCGGTGCGACGTGCCGTGGAAACCATAACGGCGTACACCTAACTCTTCataata < 1:171887/90‑1 (MQ=255) cAGATTCAGCAGCGAATGTGCGCGCTGGGAAACATAGCGGTGCGACGTGCCGTGGAAACCATAACGGCGTACACCTAACTCTTCataata < 2:1711806/90‑1 (MQ=255) gATTCAGCAGCGAATGTGCCCGCTGGGAAACATAGCGGTGCGACGTGCCGTGGAAACCATAACGGCGTACACCTAACTCTTCATAATAtt > 2:633361/1‑90 (MQ=255) gATTCAGCAGCGAATGTGCCCGCTGGGAAACATAGCGGTGCGACGTGCCGTGGAAACCATAACGGCGTACACCTAACTCTTCATAATAtt < 1:633361/90‑1 (MQ=255) ttCAGCAGCGAATGTGCGCGCTGGGAAACATAGCGGTGCGACGTGCCGTGGAAACCATAACGGCGTACACCTAACTCTTCATAATATTTc < 2:2096430/90‑1 (MQ=255) gcGAATGTGCGCGCTGGGAAACATAGCGGTGCGACGTGCCGTGGAAACCATAACGGCGTACACCTAACTCTTCATAATATTTCCACGGCa > 1:446932/1‑90 (MQ=255) cGAATGTGCGCGCTGGGAAACATAGCGGTGCGACGTGCCGTGGAAACCATAACGGCGTACACCTAACTCTTCATAATATTTCCACGGCAg < 2:486944/90‑1 (MQ=255) gAATGTGCGCGCTGGGAAACATAGCGGTGCGACGTGCCGTGGAAACCATAACGGCGTACACCTAACTCTTCATAATATTTCCACGGCAgg > 2:404633/1‑90 (MQ=255) gAATGTGCGCGCTGGGAAACATAGCGGTGCGACGTGCCGTGGAAACCATAACGGCGTACACCTAACTCTTCATAATATTTCCACGGCAgg > 1:1465836/1‑90 (MQ=255) aaTGTGCGCGCTGGGAAACATAGCGGTGCGACGTGCCGTGGAAACCATAACGGCGTACACCTAACTCTTCATAATATTTCCACGGCAGGc < 2:837200/90‑1 (MQ=255) aaTGTGCGCGCTGGGAAACATAGCGGTGCGACGTGCCGTGGAAACCATAACGGCGTACACCTAACTCTTCATAATATTTCCACGGCAGGc < 1:244229/90‑1 (MQ=255) cgcgcTGGGAAACATAGCGGTGCGACGTGCCGTGGAAACCATAACGGCGTACACCTAACTCTTCATAATATTTCCACGGCAGGCCGtata > 1:1002612/1‑90 (MQ=255) cgcgcTGGGAAACATAGCGGTGCGACGTGCCGTGGAAACCATAACGGCGTACACCTAACTCTTCATAATATTTCCACGGCAGGCCGtata > 1:2135876/1‑90 (MQ=255) tAGAGGTGCGACGTGCCGTGGAAACCATAACGGCGTACACCTAACTCTTCATAATATTTCCACGGCAGGCCGTATAAATAAGCTTCCGGa > 1:542332/1‑90 (MQ=255) gCGGTGCGACGTGCCGTGGAAACCATAACGGCGTACACCTAACTCTTCATAATATTTCCACGGCAGGCCGTTTAAATAAGCTTCCGGAGc > 1:1036859/1‑90 (MQ=255) gCGGTGCGACGTGCCGTGGAAACCATAACGGCGTACACCTAACTCTTCATAATATTTCCACGGCAGGCCGTATAAATAAGCTTCCGGAGc > 1:1806978/1‑90 (MQ=255) gCGGTGCGACGTGCCGTGGAAACCATAACGGCGTACACCTAACTCTTCATAATATTTCCACGGCAGGCCGTATAAATAAGCTTCCGGAGc < 2:1141557/90‑1 (MQ=255) gCGGTGCGACGTGCCGTGGAAACCATAACGGCGTACACCTAACTCTTCATAATATTTCCACGGCAGGCCGTAT‑AATAAGCTTCCGGAGcc > 1:1200484/1‑90 (MQ=255) ggTGCGACGTGCCGTGGAAACCATAACGGCGTACACCTAACTCTTCATAATATTTCCACGGCAGTCCGTATAAATAAGCTTCCGGAGCCa > 2:1535629/1‑90 (MQ=255) ggTGCGACGTGCCGTGGAAACCATAACGGCGTACACCTAACTCTTCATAATATTTCCACGGCAGGCCGTATAAATAAGCTTCCGGAGCCa > 2:1248202/1‑90 (MQ=255) gTGCGACGTGGCGTGGGAACCATAACGGCGTACACCTAACTCTTCATAATATTTCCACGGCAGGCCGTATAAATAAGCTTCCGGAGCCAt > 2:65278/1‑90 (MQ=255) gTGCGACGTGCCGTGGAAACCATAACGGCGTACACCTAACTCTTCATAATATTTc > 2:962201/1‑55 (MQ=255) gTGCGACGTGCCGTGGAAACCATAACGGCGTACACCTAACTCTTCATAATATTTc < 1:962201/55‑1 (MQ=255) gTGCGACGTGCCGTGGAAACCATAACGGCGTACACCTAACTCTTCATAATATTTCCACGGCAGGCCGTATAAATAAGCTTCCGGAGCCAt > 2:1874620/1‑90 (MQ=255) gTGCGACGTGCCGTGGAAACCATAACGGCGTACACCTAACTCTTCATAATATTTCCACGGCAGGCCGTATAAATAAGCTTCCGGAGCCAt > 2:198711/1‑90 (MQ=255) gCGACGTGCCGTGGAAACCATAACGGCGTACACCTAACTCTTCATAATATTTCCACGGCAGGCCGTATAAATAAGCTTCCGGAGc > 1:2055657/1‑85 (MQ=255) gCGACGTGCCGTGGAAACCATAACGGCGTACACCTAACTCTTCATAATATTTCCACGGCAGGCCGTATAAATAAGCTTCCGGAGc < 2:2055657/85‑1 (MQ=255) gCGACGTGCCGTGGAAACCATAACGGCGTACACCTAACTCTTCATAATATTTCCACGGCAGGCCGTATAAATAAGCTTCCGGAGCCAt > 2:375774/1‑88 (MQ=255) gCGACGTGCCGTGGAAACCATAACGGCGTACACCTAACTCTTCATAATATTTCCACGGCAGGCCGTATAAATAAGCTTCCGGAGCCAt < 1:375774/88‑1 (MQ=255) gCGACGTGCCGTGGAAACCATAACGGCGTACACCTAACTCTTCATAATATTTCCACGGCAGGCCGTATAAATAAGCTTCCGGAGCCATCg > 1:1293087/1‑90 (MQ=255) gCGACGTGCCGTGGAAACCATAACGGCGTACACCTAACTCTTCATAATATTTCCACGGCAGGCCGTATAAATAAGCTTCCGGAGCCATCg > 1:752627/1‑90 (MQ=255) gcctGCCGTGGAAACCATAACGGCGTACACCTAACTCTTCATAATATTTCCACGGCAGGCCGGATAAATAAGCTTCCGGAGCCATCGTCt > 2:1395202/4‑90 (MQ=255) gcctGCCGTGGAAACCATAACGGCGTAAACCTAACTCTTCATAATATTTCCACGGCAGGCCGTATAAATAAGCTTCCGGAGCCATCGTCt > 2:1356704/4‑90 (MQ=255) gTGCCGTGGAAACCATAACGGCGTACACCTAACTCTTCATAATATTTCCACGGCAgg > 1:92697/1‑57 (MQ=255) gTGCCGTGGAAACCATAACGGCGTACACCTAACTCTTCATAATATTTCCACGGCAgg < 2:92697/57‑1 (MQ=255) gTGCCGTGGAAACCATAACGGCGTACACCTAACTCTTCATAATATTTCCACGGCAGGCCGTATAAATAAGCTTCCGGAGCCATCGTCtgg > 1:1083963/1‑90 (MQ=255) | AAGATGCGCCACAACCAGGCCGGAGTCATCTTCCGCCAGATTCAGCAGCGAATGTGCGCGCTGGGAAACATAGCGGTGCGACGTGCCGTGGAAACCATAACGGCGTACACCTAACTCTTCATAATATTTCCACGGCAGGCCGTATAAATAAGCTTCCGGAGCCATCGTCTGG > NZ_CP009273/3256408‑3256579 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |