| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NZ_CP009273 | 3256491 = | 68 (0.990) | 4 (0.070) | 3/138 | 4.2 | 5.9% | coding (529/1209 nt) | tdcD | propionate kinase |
| ? | NZ_CP009273 | 3256545 = | 68 (1.150) | coding (475/1209 nt) | tdcD | propionate kinase | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
CGAATGTGCGCGCTGGGAAACATAGCGGTGCGACGTGCCGTGGAAACCATAACGGCGTACACCTAACTCTTCATAATATTTCCACGGCAGGCCGTATAAATAAGCTTCCGGAGCCATCGTCTGGTGGAAACTGGTATCAAATACCGCCACCTGAGTTACGCCCGGAAATAATTGCTGCG > NZ_CP009273/3256456‑3256634 | cGAATGTGCGCGCTGGGAAACATAGCGGTGCGACGTGCCGTGGAAACCATAACGGCGTACACCTAACTCTTCATAATATTTCCACGGCAg < 2:486944/90‑1 (MQ=255) gAATGTGCGCGCTGGGAAACATAGCGGTGCGACGTGCCGTGGAAACCATAACGGCGTACACCTAACTCTTCATAATATTTCCACGGCAgg > 2:404633/1‑90 (MQ=255) gAATGTGCGCGCTGGGAAACATAGCGGTGCGACGTGCCGTGGAAACCATAACGGCGTACACCTAACTCTTCATAATATTTCCACGGCAgg > 1:1465836/1‑90 (MQ=255) aaTGTGCGCGCTGGGAAACATAGCGGTGCGACGTGCCGTGGAAACCATAACGGCGTACACCTAACTCTTCATAATATTTCCACGGCAGGc < 1:244229/90‑1 (MQ=255) aaTGTGCGCGCTGGGAAACATAGCGGTGCGACGTGCCGTGGAAACCATAACGGCGTACACCTAACTCTTCATAATATTTCCACGGCAGGc < 2:837200/90‑1 (MQ=255) cgcgcTGGGAAACATAGCGGTGCGACGTGCCGTGGAAACCATAACGGCGTACACCTAACTCTTCATAATATTTCCACGGCAGGCCGtata > 1:2135876/1‑90 (MQ=255) cgcgcTGGGAAACATAGCGGTGCGACGTGCCGTGGAAACCATAACGGCGTACACCTAACTCTTCATAATATTTCCACGGCAGGCCGtata > 1:1002612/1‑90 (MQ=255) tAGAGGTGCGACGTGCCGTGGAAACCATAACGGCGTACACCTAACTCTTCATAATATTTCCACGGCAGGCCGTATAAATAAGCTTCCGGa > 1:542332/1‑90 (MQ=255) gCGGTGCGACGTGCCGTGGAAACCATAACGGCGTACACCTAACTCTTCATAATATTTCCACGGCAGGCCGTTTAAATAAGCTTCCGGAGc > 1:1036859/1‑90 (MQ=255) gCGGTGCGACGTGCCGTGGAAACCATAACGGCGTACACCTAACTCTTCATAATATTTCCACGGCAGGCCGTATAAATAAGCTTCCGGAGc > 1:1806978/1‑90 (MQ=255) gCGGTGCGACGTGCCGTGGAAACCATAACGGCGTACACCTAACTCTTCATAATATTTCCACGGCAGGCCGTATAAATAAGCTTCCGGAGc < 2:1141557/90‑1 (MQ=255) gCGGTGCGACGTGCCGTGGAAACCATAACGGCGTACACCTAACTCTTCATAATATTTCCACGGCAGGCCGTAT‑AATAAGCTTCCGGAGcc > 1:1200484/1‑90 (MQ=255) ggTGCGACGTGCCGTGGAAACCATAACGGCGTACACCTAACTCTTCATAATATTTCCACGGCAGTCCGTATAAATAAGCTTCCGGAGCCa > 2:1535629/1‑90 (MQ=255) ggTGCGACGTGCCGTGGAAACCATAACGGCGTACACCTAACTCTTCATAATATTTCCACGGCAGGCCGTATAAATAAGCTTCCGGAGCCa > 2:1248202/1‑90 (MQ=255) gTGCGACGTGGCGTGGGAACCATAACGGCGTACACCTAACTCTTCATAATATTTCCACGGCAGGCCGTATAAATAAGCTTCCGGAGCCAt > 2:65278/1‑90 (MQ=255) gTGCGACGTGCCGTGGAAACCATAACGGCGTACACCTAACTCTTCATAATATTTCCACGGCAGGCCGTATAAATAAGCTTCCGGAGCCAt > 2:198711/1‑90 (MQ=255) gTGCGACGTGCCGTGGAAACCATAACGGCGTACACCTAACTCTTCATAATATTTCCACGGCAGGCCGTATAAATAAGCTTCCGGAGCCAt > 2:1874620/1‑90 (MQ=255) gCGACGTGCCGTGGAAACCATAACGGCGTACACCTAACTCTTCATAATATTTCCACGGCAGGCCGTATAAATAAGCTTCCGGAGc > 1:2055657/1‑85 (MQ=255) gCGACGTGCCGTGGAAACCATAACGGCGTACACCTAACTCTTCATAATATTTCCACGGCAGGCCGTATAAATAAGCTTCCGGAGc < 2:2055657/85‑1 (MQ=255) gCGACGTGCCGTGGAAACCATAACGGCGTACACCTAACTCTTCATAATATTTCCACGGCAGGCCGTATAAATAAGCTTCCGGAGCCAt > 2:375774/1‑88 (MQ=255) gCGACGTGCCGTGGAAACCATAACGGCGTACACCTAACTCTTCATAATATTTCCACGGCAGGCCGTATAAATAAGCTTCCGGAGCCAt < 1:375774/88‑1 (MQ=255) gCGACGTGCCGTGGAAACCATAACGGCGTACACCTAACTCTTCATAATATTTCCACGGCAGGCCGTATAAATAAGCTTCCGGAGCCATCg > 1:752627/1‑90 (MQ=255) gCGACGTGCCGTGGAAACCATAACGGCGTACACCTAACTCTTCATAATATTTCCACGGCAGGCCGTATAAATAAGCTTCCGGAGCCATCg > 1:1293087/1‑90 (MQ=255) gcctGCCGTGGAAACCATAACGGCGTACACCTAACTCTTCATAATATTTCCACGGCAGGCCGGATAAATAAGCTTCCGGAGCCATCGTCt > 2:1395202/4‑90 (MQ=255) gcctGCCGTGGAAACCATAACGGCGTAAACCTAACTCTTCATAATATTTCCACGGCAGGCCGTATAAATAAGCTTCCGGAGCCATCGTCt > 2:1356704/4‑90 (MQ=255) gTGCCGTGGAAACCATAACGGCGTACACCTAACTCTTCATAATATTTCCACGGCAgg < 2:92697/57‑1 (MQ=255) gTGCCGTGGAAACCATAACGGCGTACACCTAACTCTTCATAATATTTCCACGGCAgg > 1:92697/1‑57 (MQ=255) gTGCCGTGGAAACCATAACGGCGTACACCTAACTCTTCATAATATTTCCACGGCAGGCCGTATAAATAAGCTTCCGGAGCCATCGTCtgg > 1:1083963/1‑90 (MQ=255) gCCGTGGAAACCATAACGGCGTACACCTAACTCTTCATAATATTTCCACGGCAGGCCGTATAAATAAGCTTCCGGAGCCATCGTCtggtg > 1:834447/1‑90 (MQ=255) gCCGTGGAAACCATAACGGCGTACACCTAACTCTTCATAATATTTCCACGGCAGGCCGTATAAATAAGCTTCCGGAGCCATCGTCtggtg > 1:587105/1‑90 (MQ=255) gAAACCATAACGGCGTACACCTAACTCTTCATAATATTTCCACGGCAGGCCGTATAAATAAGCTTCCGGAGCCATCGTCTGGTGGAAACt < 2:1334764/90‑1 (MQ=255) gAAACCATAACGGCGTACACCTAACTCTTCATAATATTTCCACGGCAGGCCGTATAAATAAGCTTCCGGAGCCATCGTCTGGTGGAAACt < 1:1033023/90‑1 (MQ=255) gAAACCATAACGGCGTACACCTAACTCTTCATAATATTTCCACGGCAGGCCGTATAAATAAGCTTCCGGAGCCATCGTCTGGTGGAAACt < 2:247106/90‑1 (MQ=255) gAAACCATAACGGCGTACACCTAACTCTTCATAATATTTCCACGGCAGGCCGTATAAATAAGCTTCCGGAGCCATCGTCTGGTGGAAACt < 2:446932/90‑1 (MQ=255) aaCCATAACGGCGTACACCTAACTCTTCATAATATTTCCACGGCAGGCCGTATAAATAAGCTTCCGGAGCCATCGTCTGGTGGAAACTgg < 2:338174/90‑1 (MQ=255) ccATAACGGCGTACACCTAACTCTTCATAATATTTCCACGGCAGGCCGTATAAATAAGCTTCCGGAGCCATCGTCTGGTGGAAACTGGTa > 2:1361495/1‑90 (MQ=255) ccATAACGGCGTACACCTAACTCTTCATAATATTTCCACGGCAGGCCGTATAAATAAGCTTCCGGAGCCATCGTCTGGTGGAAACTGGTa > 2:476594/1‑90 (MQ=255) ccATAACGGCGTACACCTAACTCTTCATAATATTTCCACGGCAGGCCGTATAAATAAGCTTCCGGAGCCATCGTCTGGTGGAAACTGGTa > 2:1838120/1‑90 (MQ=255) ccATAACGGCGTACACCTAACTCTTCATAATATTTCCACGGCAGGCCGTATAAATAAGCTTCCGGAGCCATCGTCTGGTGGAAACTGGTa > 2:171126/1‑90 (MQ=255) ccATAACGGCGTACACCTAACTCTTCATAATATTTCCACGGCAGGCCGTATAAATAAGCTTCCGGAGCCATCGTCTGGTGGAAACTGGTa > 2:1308982/1‑90 (MQ=255) ggCGTACACCTAACTCTTCATAATATTTCCACGGCAGTCCGTATAAATAAGCTTCCGGAGCCATCGTCTGGTGGAAACTGGTATCAAATa < 1:1535629/90‑1 (MQ=255) ggCGTACACCTAACTCTTCATAATATTTCCACGGCAGGCCGTataaat < 2:1499741/48‑1 (MQ=255) ggCGTACACCTAACTCTTCATAATATTTCCACGGCAGGCCGTataaat > 1:1499741/1‑48 (MQ=255) gTACACCTAACTCTTCATAATATTTCCACGGCAGGCCGTATAAATAAGCTTCCGGAGCCATCGTCTGGTGGAAACTGGTATCAAATACCg < 2:1292928/90‑1 (MQ=255) gTACACCTAACTCTTCATAATATTTCCACGGCAGGCCGTATAAATAAGCTTCCGGAGCCATCGTCTGGTGGAAACTGGTATCAAATACCg > 2:1294546/1‑90 (MQ=255) gTACACCTAACTCTTCATAATATTTCCACGGCAGGCCGTATAAATAAGCTTCCGGAGCCATCGTCTGGTGGAAACTGGTATCAAATACCg > 2:1663826/1‑90 (MQ=255) gTACACCTAACTCTTCATAATATTTCCACGGCAGGCCGTATAAATAAGCTTCCGGAGCCATCGTCTGGTGGAAACTGGTATCAAATACCg > 1:2105767/1‑90 (MQ=255) gTACACCTAACTCTTCATAATATTTCCACGGCAGGCCGTATAAATAAGCTTCCGGAGCCATCGTCTGGTGGAAACTGGTATCAAATACCg > 2:1505816/1‑90 (MQ=255) acacCTAACTCTTCATAATATTTCCACGGCAGGCCGTATAAATAAGCTTCCGGAGCCATCGTCTGGTGGAAACTGGTATCAAATACCGcc < 1:1663826/90‑1 (MQ=255) acacCTAACTCTTCATAATATTTCCACGGCAGGCCGTATAAATAAGCTTCCGGAGCCATCGTCTGGTGGAAACTGGTATCAAATACCGcc < 1:1278512/90‑1 (MQ=255) ccTAACTCTTCATAATATTTCCACGGCAGGCCGTATAAATAAGCTTCCGGAGCCATCGTCTGGTGGAAACTGGTATCAAAt > 1:500457/1‑81 (MQ=255) ccTAACTCTTCATAATATTTCCACGGCAGGCCGTATAAATAAGCTTCCGGAGCCATCGTCTGGTGGAAACTGGTATCAAAt < 2:500457/81‑1 (MQ=255) cTAACTCTTCATAATATTTCCACGGCAGGCCGTATAAATAAGCTTCCGGAGCCATCGTCTGGTGGAAACTGGTATCAAATACCGCCACCt < 2:2128581/90‑1 (MQ=255) tAACTCTTCATAATATTTCCACGGCAGGCCGTATAAATAAGCTTCCGGAGCCATCGTCTGGTGGAAACTGGTATCAAATACCGCCACCTg > 1:77604/1‑90 (MQ=255) aaCTCTTCATAATATTTCCACGGCAGGCCGTATAAATAAGCTTCCGGAGCCATCGTCTGGTGGAAACTGGTATCAAATACCGCCACCTGa > 2:536172/1‑90 (MQ=255) aaCTCTTCATAATATTTCCACGGCAGGCCGTATAAATAAGCTTCCGGAGCCATCGTCTGGTGGAAACTGGTATCAAATACCGCCACCTGa > 1:840463/1‑90 (MQ=255) aaCTCTTCATAATATTTCCACGGCAGGCCGTATAAATAAGCTTCCGGAGCCATCGTCTGGTGGAAACTGGTATCAAATACCGCCACCTGa > 1:1299818/1‑90 (MQ=255) ttCATAATATTTCCACGGCAGGCCGTATAAATAAGCTTCCGGAGCCATCGTCTGGTGGAAACTGGTATCAAATACCGCCAcc > 2:391520/1‑82 (MQ=255) ttCATAATATTTCCACGGCAGGCCGTATAAATAAGCTTCCGGAGCCATCGTCTGGTGGAAACTGGTATCAAATACCGCCAcc < 1:391520/82‑1 (MQ=255) ttCATAATATTTCCACGGCAGGCCGTATAAATAAGCTTCCGGAGCCATCGTCTGGTGGAAACTGGTATCAAATACCGCCACCTGAGTTAc > 2:1622898/1‑90 (MQ=255) ttCATAATATTTCCACGGCAGGCCGTATAAATAAGCTTCCGGAGCCATCGTCTGGTGGAAACTGGTATCAAATACCGCCACCTGAGTTAc > 2:1614618/1‑90 (MQ=255) ttCATAATATTTCCACGGCAGGCCGTATAAATAAGCTTCCGGAGCCATCGTCTGGTGGAAACTGGTATCAAATACCGCCACCTGAGTTAc > 2:1104034/1‑90 (MQ=255) cttaataTTTCCACGGCAGGCCGTATAAATAAGCTTCCGGAGCCATCGTCTGGTGGAAACTGGTATCAAATACCGCCACCTGAGTTACGc > 2:1421266/3‑90 (MQ=255) cATAATATTTCCACGGCAGGCCGTATAAATAAGCTTCCGGAGCCATCGTCTGGTGGAAACTGGTATCAAATACCGCCACCTGAGTTACGc > 2:1796976/1‑90 (MQ=255) cATAATATTTCCACGGCAGGCCGTATAAATAAGCTTCCGGAGCCATCGTCTGGTGGAAACTGGTATCAAATACCGCCACCTGAGTTACGc > 1:1767916/1‑90 (MQ=255) cATAATATTTCCACGGCAGGCCGTATAAATAAGCTTCCGGAGCCATCGTCTGGTGGAAACTGGTATCAAATACCGCCACCTGAGTTACGc > 1:1682452/1‑90 (MQ=255) taataTTTCCACGGCAGGCCGTATAAATAAGCTTCCGGAGCCATCGTCTGGTGGAAACTGGTATCAAATACCGCCACCTGAGTTACGccc < 2:394022/90‑1 (MQ=255) taataTTTCCACGGCAGGCCGTATAAATAAGCTTCCGGAGCCATCGTCTGGTGGAAACTGGTATCAAATACCGCCACCTGAGTTACGccc < 1:363135/90‑1 (MQ=255) atatTTCCACGGCAGGCCGTATAAATAAGCTTCCGGAGCCATCGTc < 1:1773078/46‑1 (MQ=255) atatTTCCACGGCAGGCCGTATAAATAAGCTTCCGGAGCCATCGTc > 2:1773078/1‑46 (MQ=255) tttCCACGGCAGGCCGTATAAATAAGCTTCCGGAGCCATCGTCTGGTGGAAACTGGTAt < 2:1495107/59‑1 (MQ=255) tttCCACGGCAGGCCGTATAAATAAGCTTCCGGAGCCATCGTCTGGTGGAAACTGGTAt > 1:1495107/1‑59 (MQ=255) tttCCACGGCAGGCCGTATAAATAAGCTTCCGGAGCCATCGTCTGGTGGAAACTGGTATCAAATACCGcc < 1:859385/70‑1 (MQ=255) tttCCACGGCAGGCCGTATAAATAAGCTTCCGGAGCCATCGTCTGGTGGAAACTGGTATCAAATACCGcc > 2:859385/1‑70 (MQ=255) tttCCACGGCAGGCCGTATAAATAAGCTTCCGGAGCCATCGTCTGGTGGAAACTGGTATCAAATACCGCCACCTGAGTTACGCCCGGaaa > 2:576077/1‑90 (MQ=255) tttCCACGGCAGGCCGTATAAATAAGCTTCCGGAGCCATCGTCTGGTGGAAACTGGTATCAAATACCGCCACCTGAGTTACGCCCGGaaa > 1:714660/1‑90 (MQ=255) tttCCACGGCAGGCCGTATAAATAAGCTTCCGGAGCCATCGTCTGGTGGAAACTGGTATCAAATACCGCCACCTGAGTTACGCCCGGaaa > 1:371815/1‑90 (MQ=255) tttCCACGGCAGGCCGTATAAATAAGCTTCCGGAGCCATCGTCTGGTGGAAACTGGTATCAAATACCGCCACCTGAGTTACGCCCGGaaa > 1:317747/1‑90 (MQ=255) tttCCACGGCAGGCCGTATAAATAAGCTTCCGGAGCCATCGTCTGGTGGAAACTGGTATCAAATACCGCCACCTGAGTTACGCCCGGaaa > 1:1906090/1‑90 (MQ=255) ccACGGCAGGCCGTATAAATAAGCTTCCGGAGCCATCGTCTGGTGGAAACTGGTATCAAATACCGCCACCTGAGTTACGCCCGGAaataa < 1:1874620/90‑1 (MQ=255) ggCAGGCCGTATAAATAAGCTTCCGGAGCCATCGTCTGGTGGAAACTGGTATCAAATACCGCCACCTGAGTTACGCCCGGAAATAATtgc < 2:380016/90‑1 (MQ=255) ggCAGGCCGTATAAATAAGCTTCCGGAGCCATCGTCTGGTGGAAACTGGTATCAAATACCGCCACCTGAGTTACGCCCGGAAATAATtgc > 1:222683/1‑90 (MQ=255) ggCAGGCCGTATAAATAAGCTTCCGGAGCCATCGTCTGGTGGAAACTGGTATCAAATACCGCCACCTGAGTTACGCCCGGAAATAATtgc > 2:29280/1‑90 (MQ=255) ggCAGGCCGTATAAATAAGCTTCCGGAGCCATCGTCTGGTGGAAACTGGTATCAAATACCGCCACCTGAGTTACGCCCGGAAATAATtgc > 1:488054/1‑90 (MQ=255) gCAGGCCGTATAAATAAGCTTCCGGAGCCATCGTCTGGTGGAAACt < 1:890037/46‑1 (MQ=255) gCAGGCCGTATAAATAAGCTTCCGGAGCCATCGTCTGGTGGAAACt > 2:890037/1‑46 (MQ=255) gCAGGCCGTATAAATAAGCTTCCGGAGCCATCGTCTGGTGGAAACTGGTATCAAATACCGCCACCTGAGTTACGCCCGGAAATAATtgct > 1:1460027/1‑90 (MQ=255) cAGGCCGTATAAATAAGCTTCCGGAGCCATCGTCTGGTGGAAACTGGTATCAAATACCGCCACCTGAGTTACGCCCGGAAATAATtgctg > 1:1507156/1‑90 (MQ=255) ggCCGTATAAATAAGCTTCCGGAGCCATCGTCTGGTGGAAACTgg < 2:1553975/45‑1 (MQ=255) ggCCGTATAAATAAGCTTCCGGAGCCATCGTCTGGTGGAAACTgg > 1:1553975/1‑45 (MQ=255) ggCCGTATAAATAAGCTTCCGGAGCCATCGTCTGGTGGAAACTgg > 1:997700/1‑45 (MQ=255) ggCCGTATAAATAAGCTTCCGGAGCCATCGTCTGGTGGAAACTgg < 2:997700/45‑1 (MQ=255) ggCCGTATAAATAAGCTTCCGGAGCCATCGTCTGGTGGAAACTGGTATCAAATACCGCCACCTGAGTTAc > 1:651936/1‑70 (MQ=255) ggCCGTATAAATAAGCTTCCGGAGCCATCGTCTGGTGGAAACTGGTATCAAATACCGCCACCTGAGTTAc < 2:651936/70‑1 (MQ=255) ggCCGTATAAATAAGCTTCCGGAGCCATCGTCTGGTGGAAACTGGTATCAAATACCGCCACCTGAGTTACGCCCGGAAATAATTGCTgcg > 1:668610/1‑90 (MQ=255) | CGAATGTGCGCGCTGGGAAACATAGCGGTGCGACGTGCCGTGGAAACCATAACGGCGTACACCTAACTCTTCATAATATTTCCACGGCAGGCCGTATAAATAAGCTTCCGGAGCCATCGTCTGGTGGAAACTGGTATCAAATACCGCCACCTGAGTTACGCCCGGAAATAATTGCTGCG > NZ_CP009273/3256456‑3256634 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 28 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |