New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NZ_CP009273	= 3498948	7 (0.630)	3 (0.290)	3/158	0.9	30.6%	coding (432/1086 nt)	yhfS	aminotransferase class I/II‑fold pyridoxal phosphate‑dependent enzyme
	?	NZ_CP009273	= 3498961	7 (0.670)					coding (419/1086 nt)	yhfS	aminotransferase class I/II‑fold pyridoxal phosphate‑dependent enzyme

AGTTGTCATCGGTTAACGCTGGAACACCTGCCGCGCGCAACGTTGCCAGCACATCTGCCAGCACGTAGCTGTCCTGCGGCTGCTGGCGCGTATGCTGCACCAGCGCCGCATCCGGTTGTTGCTCGTCGACGACCTGCTTCAGTGCCGACAGGTCATTGAAATCAACAGTAATAA  >  NZ_CP009273/3498863‑3499036                                                                                      |                                                                                         aGTTGTCATCGGTTAACGCTGGAACACCTGCCGCGCGCAACGTTGCCAGCACATCTGCCAGCACGTAGCTGTCCTGCGGCTGCTGGcgcg                                                                                      <  1:254017/90‑1 (MQ=255)            gTTAACGCTGGAACACCTGCCGCGCGCAACGTTGCCAGCACATCTGCCAGCACGTAGCTGTCCTGCGGCTGCTGGCGCGTATGCTGCAcc                                                                           <  1:273131‑M2/90‑3 (MQ=255)                          acCTGCCGCGCGCAACGTTGCCAGCACATCTGCCAGCACGTAGCTGTCCTGCGGCTGCTGGCGCGTATGCTGCACCAGCGCCGCATCCgg                                                             >  1:292607/1‑90 (MQ=255)                           ccTGCCGCGCGCAACGTTGCCAGCACATCTGCCAGCACGTAGCTGTCCTGCGGCTGCTGGtgcagcatacgcgccagcagccgcaggaca                                                            >  2:10152‑M1/1‑60 (MQ=255)                                     gcAACGTTGCCAGCACATCTGCCAGCACGTAGCTGTCCTGCGGCTGCTGGCGCGTATGCTGCAccagcgccgcaggacagctacgtgctg                                                  >  1:91698‑M2/1‑63 (MQ=255)                                             gCCAGCACATCTGCCAGCACGTAGCTGTCCTGCGGCTGCTGGCGCGTATGCTGCAccagcagccgcaggacagctacgtgctggcagatg                                          >  1:112808‑M2/1‑55 (MQ=255)                                                  cacaTCTGCCAGCACGTAGCTGTCCTGCGGCTGCTGGCGCGTATGCTGCACCAGCGCCGCATCCGGTTGTTGCTCGTCGACGACCTGCtt                                     <  1:67089/90‑1 (MQ=255)                                                    caTCTGCCAGCACGTAGCTGTCCTGCGGCTGCTGGtgcagcatacgcgccagcagccgcaggacagctacgtgctggcagatgtgctggc                                   >  1:112808‑M1/1‑35 (MQ=255)                                                           cAGCACGTAGCTGTCCTGCGGC‑GCTGGtgcagcatacgcgccagcagccgcaggacagctacgtgctggcagatgtgctggcaacgttgc                           >  1:91698‑M1/1‑27 (MQ=255)                                                            aGCACGTAGCTGTCCTGCGGCTGCTGGCGCGTATGCTGCACCAGCGCCGCATCCGGTTGTTGCTCGTCGACGACCTGCTTCAGTGCCGAc                           >  2:125140/1‑90 (MQ=255)                                                                      tGTCCTGCGGCTGCTGGCGCGTATGCTGCAccagcagccgcaggacagctacgtgctggcagatgtgctggcaacgttgcgcgcggcagg                 >  2:10152‑M2/1‑30 (MQ=255)                                                                       gTCCTGCGGCTGCTGGCGCGTATGCTGCACCAGCGCCGCATCCGGTTGTTGCTCGTCGACGACCTGCTTCAGTGCCGACAGGTCATTGaa                >  1:268330/1‑90 (MQ=255)                                                                            gCGGCTGCTGGCGCGTATGCTGCACCAGCGCCGCATCCGGTTGTTGCTCGTCGACGACCTGCTTCAGTGCCGACAGGTCATTGAAATCaa           >  1:47919/1‑90 (MQ=255)                                                                              ggCTGCTGGCGCGTATGCTGCACCAGCGCCGCATCCGGTTGTTGCTCGTCGACGACCTGCTTCAGTGCCGACAGGTCATTGAAATCAACa         <  2:104223/90‑1 (MQ=255)                                                                                     ggtgcagcatacgcgccagcagccgcaggacagctacgtgctggcagatgtgctggcaacgttgcgcgcggcaggtgttccagcgttaac  <  1:273131‑M1/90‑89 (MQ=255)                                                                                      |                                                                                         AGTTGTCATCGGTTAACGCTGGAACACCTGCCGCGCGCAACGTTGCCAGCACATCTGCCAGCACGTAGCTGTCCTGCGGCTGCTGGCGCGTATGCTGCACCAGCGCCGCATCCGGTTGTTGCTCGTCGACGACCTGCTTCAGTGCCGACAGGTCATTGAAATCAACAGTAATAA  >  NZ_CP009273/3498863‑3499036

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.