New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NZ_CP009273	= 3498948	7 (0.630)	3 (0.290)	3/158	0.9	30.6%	coding (432/1086 nt)	yhfS	aminotransferase class I/II‑fold pyridoxal phosphate‑dependent enzyme
	?	NZ_CP009273	= 3498961	7 (0.670)					coding (419/1086 nt)	yhfS	aminotransferase class I/II‑fold pyridoxal phosphate‑dependent enzyme

GTTAACGCTGGAACACCTGCCGCGCGCAACGTTGCCAGCACATCTGCCAGCACGTAGCTGTCCTGCGGCTGCTGGCGCGTATGCTGCACCAGCGCCGCATCCGGTTGTTGCTCGTCGACGACCTGCTTCAGTGCCGACAGGTCATTGAAATCAACAGTAATAAGCGTCAGCCCCATC  >  NZ_CP009273/3498874‑3499050                                                                                        |                                                                                          gTTAACGCTGGAACACCTGCCGCGCGCAACGTTGCCAGCACATCTGCCAGCACGTAGCTGTCCTGCGGCTGCTGGCGCGTATGCTGCAcc                                                                                         <  1:273131‑M2/90‑3 (MQ=255)               acCTGCCGCGCGCAACGTTGCCAGCACATCTGCCAGCACGTAGCTGTCCTGCGGCTGCTGGCGCGTATGCTGCACCAGCGCCGCATCCgg                                                                           >  1:292607/1‑90 (MQ=255)                          gcAACGTTGCCAGCACATCTGCCAGCACGTAGCTGTCCTGCGGCTGCTGGCGCGTATGCTGCAccagcgccgcaggacagctacgtgctg                                                                >  1:91698‑M2/1‑63 (MQ=255)                                  gCCAGCACATCTGCCAGCACGTAGCTGTCCTGCGGCTGCTGGCGCGTATGCTGCAccagcagccgcaggacagctacgtgctggcagatg                                                        >  1:112808‑M2/1‑55 (MQ=255)                                       cacaTCTGCCAGCACGTAGCTGTCCTGCGGCTGCTGGCGCGTATGCTGCACCAGCGCCGCATCCGGTTGTTGCTCGTCGACGACCTGCtt                                                   <  1:67089/90‑1 (MQ=255)                                                 aGCACGTAGCTGTCCTGCGGCTGCTGGCGCGTATGCTGCACCAGCGCCGCATCCGGTTGTTGCTCGTCGACGACCTGCTTCAGTGCCGAc                                         >  2:125140/1‑90 (MQ=255)                                                           tGTCCTGCGGCTGCTGGCGCGTATGCTGCAccagcagccgcaggacagctacgtgctggcagatgtgctggcaacgttgcgcgcggcagg                               >  2:10152‑M2/1‑30 (MQ=255)                                                            gTCCTGCGGCTGCTGGCGCGTATGCTGCACCAGCGCCGCATCCGGTTGTTGCTCGTCGACGACCTGCTTCAGTGCCGACAGGTCATTGaa                              >  1:268330/1‑90 (MQ=255)                                                                 gCGGCTGCTGGCGCGTATGCTGCACCAGCGCCGCATCCGGTTGTTGCTCGTCGACGACCTGCTTCAGTGCCGACAGGTCATTGAAATCaa                         >  1:47919/1‑90 (MQ=255)                                                                   ggCTGCTGGCGCGTATGCTGCACCAGCGCCGCATCCGGTTGTTGCTCGTCGACGACCTGCTTCAGTGCCGACAGGTCATTGAAATCAACa                       <  2:104223/90‑1 (MQ=255)                                                                                        aCCAGCGCCGCATCCGGTTGTTGCTCGTCGACGACCTGCTTCAGTGCCGACAGGTCATTGAAATCAACAGTAATAAGCGTCAGCCCCATc  <  2:292607/90‑1 (MQ=255)                                                                                        |                                                                                          GTTAACGCTGGAACACCTGCCGCGCGCAACGTTGCCAGCACATCTGCCAGCACGTAGCTGTCCTGCGGCTGCTGGCGCGTATGCTGCACCAGCGCCGCATCCGGTTGTTGCTCGTCGACGACCTGCTTCAGTGCCGACAGGTCATTGAAATCAACAGTAATAAGCGTCAGCCCCATC  >  NZ_CP009273/3498874‑3499050

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.