Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NZ_CP009273	2100079	2100148	70	2 [1]	[1] 3	wzy	O16 family O‑antigen polymerase

CTACGATGAATGCATAAGAGATGATAACCATAAAGACAATTTGCTTACCAGTATTCAGTATAATTGCAAAGATGAATACAATAAAAACAAGTAAAGTAAATGTTT  >  NZ_CP009273/2100089‑2100193                                                             |                                             cTACGATGAATGCATAAGAGATGATAACCATAAAGACAATTTGCTTACCAGTATTCAGTATAATTGCAAAGATGAATACAATAAAAACaa                 >  1:124823/1‑90 (MQ=255)                                                             taATTGCAAAGATGAATACAATAAAAACAAGTAAAGTAAATGttt  <  1:600044/45‑1 (MQ=255)                                                             taATTGCAAAGATGAATACAATAAAAACAAGTAAAGTAAATGttt  >  2:600044/1‑45 (MQ=255)                                                             |                                             CTACGATGAATGCATAAGAGATGATAACCATAAAGACAATTTGCTTACCAGTATTCAGTATAATTGCAAAGATGAATACAATAAAAACAAGTAAAGTAAATGTTT  >  NZ_CP009273/2100089‑2100193

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑