Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NZ_CP009273	2779873	2779892	20	2 [0]	[0] 2	BW25113_RS26005	alpha‑amylase family glycosyl hydrolase

TTCTTGTGGAGTTTACCCTCAAGGATTAAAAGACAGAGAAATTATATCAACTTTTCACGCAGAAAA  >  NZ_CP009273/2779893‑2779958 |                                                                  ttCTTGTGGAGTTTACCCTCAAGGATAAAAAGACAGAGAAATTATATCAACTTTTCACGCAGaaaa  <  1:530800/66‑1 (MQ=255) ttCTTGTGGAGTTTACCCTCAAGGATAAAAAGACAGAGAAATTATATCAACTTTTCACGCAGaaaa  >  2:530800/1‑66 (MQ=255) |                                                                  TTCTTGTGGAGTTTACCCTCAAGGATTAAAAGACAGAGAAATTATATCAACTTTTCACGCAGAAAA  >  NZ_CP009273/2779893‑2779958

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 18 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑