Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NZ_CP009273	4531500	4531510	11	2 [0]	[0] 2	fimB/fimE	type 1 fimbria switch DNA invertase FimB/type 1 fimbria switch DNA invertase FimE

TATCCATACAAAATACAATGGTTTATGTTCTTCAAAATAAATAAACAAAATCATTCATAA  >  NZ_CP009273/4531511‑4531570 |                                                            tatCCATACAAAATACAATGGTTTATGTTCTTCAAAATAAATAAACAAAATCATTCATaa  <  1:572167/60‑1 (MQ=255) tatCCATACAAAATACAATGGTTTATGTTCTTCAAAATAAATAAACAAAATCATTCATaa  >  2:572167/1‑60 (MQ=255) |                                                            TATCCATACAAAATACAATGGTTTATGTTCTTCAAAATAAATAAACAAAATCATTCATAA  >  NZ_CP009273/4531511‑4531570

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑