Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NZ_CP009273	1189840	1189866	27	3 [1]	[1] 3	rluE	23S rRNA pseudouridine(2457) synthase RluE

GTCACTTCTCGCCATTCACCATTGGCAAGATTATCCAAAGAGTAATCACCCATCGCATAGCGAATCAGTCGCAGCGTGGGGAAGCCAACA  >  NZ_CP009273/1189761‑1189850                                                                               |            gTCACTTCTCGCCATTCACCATTGGCAAGATTATCCAAAGAGTAATCACCCATCGCATAGCGAATCAGTCGCAGCGTgg             >  1:63966/1‑79 (MQ=255) gTCACTTCTCGCCATTCACCATTGGCAAGATTATCCAAAGAGTAATCACCCATCGCATAGCGAATCAGTCGCAGCGTgg             <  2:63966/79‑1 (MQ=255) gTCACTTCTCGCCATTCACCATTGGCAAGATTATCCAAAGAGTAATCACCCATCGCATAGCGAATCAGTCGCAGCGTGGGGAAGCCAACa  >  2:287152/1‑90 (MQ=255)                                                                               |            GTCACTTCTCGCCATTCACCATTGGCAAGATTATCCAAAGAGTAATCACCCATCGCATAGCGAATCAGTCGCAGCGTGGGGAAGCCAACA  >  NZ_CP009273/1189761‑1189850

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑