Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NZ_CP009273	1189840	1189866	27	3 [1]	[1] 3	rluE	23S rRNA pseudouridine(2457) synthase RluE

GGGCGGTCATGCGGCGCACCTGGCGATTACGTCCTTCATATAAGGTGATCTTCAGCCAGCTGGTGGGAATACTTTTGCGTTCACGAATTG  >  NZ_CP009273/1189852‑1189941                |                                                                           gggCGGTCATGCGGCGCACCTGGCGATTACGTCCTTCATATAAGGTGATCTTCAGCCAGCTGGTGGGAATACTTTTGCGTTCACGAATtg  >  1:99691/1‑90 (MQ=255)                gcACCTGGCGATTACGTCCTTCATATAAGGTGATCTTCAGCCAGCtg                              <  1:161615/47‑1 (MQ=255)                gcACCTGGCGATTACGTCCTTCATATAAGGTGATCTTCAGCCAGCtg                              >  2:161615/1‑47 (MQ=255)                |                                                                           GGGCGGTCATGCGGCGCACCTGGCGATTACGTCCTTCATATAAGGTGATCTTCAGCCAGCTGGTGGGAATACTTTTGCGTTCACGAATTG  >  NZ_CP009273/1189852‑1189941

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑