Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NZ_CP009273	1066625	1066647	23	2 [1]	[0] 2	rutD	pyrimidine utilization protein D

GACTAAAGTCAGCGCGTTTGAGGGCGTTAAGTCGACGCAGTAAATTATTTTTGCCCTGAAAATGCGCC  >  NZ_CP009273/1066648‑1066715 |                                                                    gACTAAAGTCAGCGCGTTTGAGGGCGTTAAGTCGACGCAGTAAATTATTTTTGCCCTGAAAATGCGcc  >  1:288371/1‑68 (MQ=255) gACTAAAGTCAGCGCGTTTGAGGGCGTTAAGTCGACGCAGTAAATTATTTTTGCCCTGAAAATGCGcc  <  2:288371/68‑1 (MQ=255) |                                                                    GACTAAAGTCAGCGCGTTTGAGGGCGTTAAGTCGACGCAGTAAATTATTTTTGCCCTGAAAATGCGCC  >  NZ_CP009273/1066648‑1066715

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑