Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NZ_CP009273	1781399	1781416	18	2 [1]	[1] 4	ppsA/ppsR	phosphoenolpyruvate synthase/posphoenolpyruvate synthetase regulatory kinase/phosphorylase PpsR

CATTTCTGCGCATTTATCTTTGCATATTTAACCGGATGAAAAAAACGGTGAATCGTTCAAGCAAATATATTTTTTTACTTTTTAAGACTGATCCCAG  >  NZ_CP009273/1781410‑1781506        |                                                                                          caTTTCTGCGCATTTATCTTTGCATATTTAACCGGATGAAAAAAACGGTGAATCGTTCAAGCAAATATATTTTTTTACTTTTTAAGACTg         <  2:165137/90‑1 (MQ=255)        gcgcATTTATCTTTGCATATTTAACCGGATGAAAAAAACGGTGAATCGTTCAAGCAAATATATTTTTTTACTTTTTAAGACTGATCCCAg  >  1:132568/1‑90 (MQ=255)        gcgcATTTATCTTTGCATATTTAACCGGATGAAAAAAACGGTGAATCGTTCAAGCAAATATATTTTTTTACTTTTTAAGACTGATCCCAg  >  2:307242/1‑90 (MQ=255)        gcgcATTTATCTTTGCATATTTAACCGGATGAAAAAAACGGTGAATCGTTCAAGCAAATATATTTTTTTACTTTTTAAGACTGATCCCAg  >  2:99646/1‑90 (MQ=255)        |                                                                                          CATTTCTGCGCATTTATCTTTGCATATTTAACCGGATGAAAAAAACGGTGAATCGTTCAAGCAAATATATTTTTTTACTTTTTAAGACTGATCCCAG  >  NZ_CP009273/1781410‑1781506

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑