Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NZ_CP009273	4241447	4241495	49	2 [0]	[1] 4	BW25113_RS20970	SopA family protein

TTGATTATTCAGATATATTTTGGAATGAAGATCTC  >  NZ_CP009273/4241412‑4241446                                   | ttGATTATTCAGATATATTTTGGAATGAAGAtctc  <  1:252126/35‑1 (MQ=255) ttGATTATTCAGATATATTTTGGAATGAAGAtctc  >  2:252126/1‑35 (MQ=255)                                   | TTGATTATTCAGATATATTTTGGAATGAAGATCTC  >  NZ_CP009273/4241412‑4241446

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑