Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NZ_CP009273	2684907	2684909	3	2 [0]	[1] 2	qseE/purL	two component system sensor histidine kinase QseE/GlrK/phosphoribosylformylglycinamidine synthase

CATTGTCGTGATTTACAGACACAAAAAAGCTCCCGGAGTTGGGAGCTTATGATAGTGGTTGGTGCTTAATGCCGCATCCGGGCTGCAAAAC  >  NZ_CP009273/2684909‑2684999  |                                                                                          cATTGTCGTGATTTACAGACACAAAAAAGCTCCCGGAGTTGGGAGCTTATGATAGTGGTTGGTGCTTAATGCCGCATCCGGGCTGCaaaa   >  2:51944/1‑90 (MQ=255)  aTTGTCGTGATTTACAGACACAAAAAAGCTCCCGGAGTTGGGAGCTTATGATAGTGGTTGGGGCTTAATGCCGCATCCGGGCTGCAAAAc  >  1:168665/1‑90 (MQ=255)  |                                                                                          CATTGTCGTGATTTACAGACACAAAAAAGCTCCCGGAGTTGGGAGCTTATGATAGTGGTTGGTGCTTAATGCCGCATCCGGGCTGCAAAAC  >  NZ_CP009273/2684909‑2684999

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑