Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NZ_CP009273	1994186	1994188	3	2 [0]	[0] 3	fliZ	flagella biosynthesis regulatory protein FliZ

ATTCCCCAAACGGCGCAAACGAACGACATATTCACGC  >  NZ_CP009273/1994149‑1994185                                     | atTCCCCAAACGGCGCAAACGAACGACATATTCACGc  >  1:138855/1‑37 (MQ=255) atTCCCCAAACGGCGCAAACGAACGACATATTCACGc  <  2:138855/37‑1 (MQ=255)                                     | ATTCCCCAAACGGCGCAAACGAACGACATATTCACGC  >  NZ_CP009273/1994149‑1994185

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑