Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NZ_CP009273	1362560	1362581	22	3 [1]	[1] 2	pspA	phage shock protein PspA

AAGAGAGAGAGGATCTGGCACGTGCAGCGTTAATTGAAAAACAGAAACTGACCGATCTGATTAAGTCCCTGGAACATGAAGTGACGCTGGTGGAC  >  NZ_CP009273/1362577‑1362671      |                                                                                          aaGAGAGAGAGGATCTGGCACGTGCAGCGTTAATTGAAAAACAGAAACTGACCGATCTGATTAAGTCCCTGGAACATGAAGTGACGCtgg       <  1:353371/90‑1 (MQ=255)      agagagGATCTGGCACGTGCAGCGTTAATTGAAAAACAGAAACTGACCGATCTGATTAAGTCCCTGGAACATGAAGTGACGCTGGTGGAc  >  2:106642/1‑90 (MQ=255)      |                                                                                          AAGAGAGAGAGGATCTGGCACGTGCAGCGTTAATTGAAAAACAGAAACTGACCGATCTGATTAAGTCCCTGGAACATGAAGTGACGCTGGTGGAC  >  NZ_CP009273/1362577‑1362671

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑