| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NZ_CP009273 | = 1046001 | NA (NA) | 15 (1.130) | 13/168 | 0.2 | 83.3% | intergenic (+15/+418) | BW25113_RS05135/cspH | IS1‑like element IS1D family transposase/cold shock‑like protein CspH |
| ? | NZ_CP009273 | = 1903046 | 3 (0.230) | intergenic (‑23/‑136) | mgrB/yobH | PhoP/PhoQ regulator MgrB/YobH family protein | |||||
TCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NZ_CP009273/1045919‑1046001‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑AGGTAGGTGAAACGGAGATTGGAGTGAAAAAGTTTCGATGGGTCGTTCTGGTTGTCGTGGTGTTGGCTTGCTTGCTGCTTTGGGC < NZ_CP009273/1903046‑1902962 TCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCAGGTAGG > 1:331737/1‑90 GGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCAGGTAGGTGAAACGGAGATT < 2:91435/90‑1 ACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCAGGTAGGTGAAACG < 1:62837/73‑1 ACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCAGGTAGGTGAAACG > 2:62837/1‑73 ATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCAGGTA < 1:214974/56‑1 ATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCAGGTA < 1:310833/56‑1 ATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCAGGTA > 2:310833/1‑56 ATCGGGCATCATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCAGGTA > 2:214974/1‑56 AAAACACTATCAATAAGTTGGAGTCATTACCAGGTAGGTGAAACGGAGATTGGAGTGAAAAAGTTTCGATGGGTCGTTCTGGTTGTCGTG < 2:328273/90‑1 CACTATCAATAAGTTGGAGTCATTACCAGGTAGGTGAAACGGAGATTGGAGTGAAAAAGTTTCGATGGGTCGTTCTGGTTGTCGTGGTGT > 1:81163/1‑90 TCAATAAGTTGGAGTCATTACCAGGTAGGTGAAACGGAGATTGGAGTGAAAAAGTTTTGATGGGTCGTTCTGGTTGTCGTGGTGTTGGCT > 2:181753/1‑90 CATTACCAGGTAGGTGAAACGGAGATTGGAGTGAAAAAGTTTCGATGGGTCGTTCTGGTTGTCGTGGTGTTGGCTTGCTTGCTGCTTTGG > 2:66520/1‑90 TTACCAGGTAGGTGAAACGGAGATTGGAGTGAAAAAGTTTCGATGGGTCGTTCTGGTTGTCGTGGTGTTGGCTTGCTTGCTGCTTTGGGC < 1:100510/90‑1 TTACCAGGTAGGTGAAACGGAGATTGGAGTGAAAAAGTTTCGATGGGTCGTTCTGGT > 1:208566/1‑57 TTACCAGGTAGGTGAAACGGAGATTGGAGTGAAAAAGTTTCGATGGGTCGTTCTGGT < 2:208566/57‑1 TCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NZ_CP009273/1045919‑1046001‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑AGGTAGGTGAAACGGAGATTGGAGTGAAAAAGTTTCGATGGGTCGTTCTGGTTGTCGTGGTGTTGGCTTGCTTGCTGCTTTGGGC < NZ_CP009273/1903046‑1902962 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |