| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NZ_CP009273 | = 1046001 | NA (NA) | 15 (1.130) | 13/168 | 0.2 | 83.3% | intergenic (+15/+418) | BW25113_RS05135/cspH | IS1‑like element IS1D family transposase/cold shock‑like protein CspH |
| ? | NZ_CP009273 | = 1903046 | 3 (0.230) | intergenic (‑23/‑136) | mgrB/yobH | PhoP/PhoQ regulator MgrB/YobH family protein | |||||
CGCCCAAAGCAGCAAGCAAGCCAACACCACGACAACCAGAACGACCCATCGAAACTTTTTCACTCCAATCTCCGTTTCACCTACCTTATGTCATTAAACTAGCATGCGTTAGTTAAACAGCGCCTAACTATGTCGATATTCGTGCTTTTTCGGAATGAGTCGCTTGCTTCAGCGC > NZ_CP009273/1902961‑1903135 | agctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccCACCTACCTTATg < 1:209974‑M2/13‑1 (MQ=255)agctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccCACCTACCTTATg < 1:149707‑M2/13‑1 (MQ=255) gcCCAAAGCAGCAAGCAAGCCAACACCACGACAACCAGAACGACCCATCGAAACTTTTTCACTCCAATCTCCGTTTCACCTACCTggtaa < 1:100510‑M2/90‑6 (MQ=255) ccAAAGCAGCAAGCAAGCCAACACCACGACAACCAGAACGACCCATCGAAACTTTTTCACTCCAATCTCCGTTTCACCTACCTggtaatg > 2:66520‑M2/1‑83 (MQ=255) gaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccCACCTACCTTATGTCATTAAACTAGCa > 2:373623‑M2/64‑90 (MQ=255) agccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccCACCTACCTTATGTCATTAAACTAGCATg > 2:236510‑M2/62‑90 (MQ=255) ccactggagcacctcaaaaaccccatcatacactaaatcagtaagttggcagcatcaccCACCTACCTTATGTCATTAAACTAGCATGCg < 1:236510‑M2/31‑1 (MQ=255) ccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccCACCTACCTTATGTCATTAAACTAGCATGCg < 1:68206‑M2/31‑1 (MQ=255) agcCAACACCACGACAACCAGAACGACCCATCAAAACTTTTTCACTCCAATCTCCGTTTCACCTACCTggtaatgactccaacttattga > 2:181753‑M2/1‑68 (MQ=255) acacCACGACAACCAGAACGACCCATCGAAACTTTTTCACTCCAATCTCCGTTTCACCTACCTggtaatgactccaacttattgatagtg > 1:81163‑M2/1‑63 (MQ=255) gcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccCACCTACCTTATGTCAt < 1:271805‑M2/17‑1 (MQ=255) gcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccCACCTACCTTATGTCAt > 2:271805‑M2/52‑68 (MQ=255) cacGACAACCAGAACGACCCATCGAAACTTTTTCACTCCAATCTCCGTTTCACCTACCTggtaatgactccaacttattgatagtgtttt < 2:328273‑M2/90‑32 (MQ=255) aaaaacaccatcatacactaaatcagtaagttggcagcatcaccCACCTACCTTATGTCATTAAACTAGCATGCGTTAGTTAAACAgcgc < 2:320190‑M2/46‑1 (MQ=255) aCCAGAACGACCCATCGAAACTTTTTCACTCCAATCTCCGTTTCACCTACCTggtaa > 1:208566‑M2/1‑52 (MQ=255) aCCAGAACGACCCATCGAAACTTTTTCACTCCAATCTCCGTTTCACCTACCTggtaa < 2:208566‑M2/57‑6 (MQ=255) aaatcagtaagttggcagcatcaccCACCTACCTTATGTCATTAAACTAGCATGCGTTAGTTAAACAGCGCCTAACTATGTCGATATTCg > 2:66556‑M2/26‑90 (MQ=255) aaatcagtaagttggcagcatcaccCACCTACCTTATGTCATTAAACTAGCATGCGTTAGTTAAACAGCGCCTAACTATGTCGATATTCg > 1:252277‑M2/26‑90 (MQ=255) aagttggcagcatcaccCACCTACCTTATGTCATTAAACTAGCATGCGTTAGTTAAACAGCGCCTAACTATGTCGATATTCGTGCttttt > 1:370902‑M2/18‑90 (MQ=255) aagttggcagcatcaccCACCTACCTTATGTCATTAAACTAGCATGCGTTAGTTAAACAGCGCCTAACTATGTCGATATTCGTGCttttt > 1:14280‑M2/18‑90 (MQ=255) aaTCTCCGTTTCACCTACCTggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctcc < 2:91435‑M2/90‑71 (MQ=255) catcaccCACCTACCTTATGTCATTAAACTAGCATGCGTTAGTTAAACAGCGCCTAACTATGTCGATATTCGTGCTTTTTCGGAATGAGt < 2:370902‑M2/83‑1 (MQ=255) cGTTTCACCTACCTggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgt < 1:62837‑M2/73‑60 (MQ=255) cGTTTCACCTACCTggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgt > 2:62837‑M2/1‑14 (MQ=255) cctacctggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgaga > 1:331737‑M2/1‑7 (MQ=255) cctacctTATGTCATTAAACTAGCATGCGTTAGTTAAACAGCGCCTAACTATGTCGATATTCGTGCTTTTTCGGAATGAGTCgcttgctt < 2:169521/90‑1 (MQ=255) tacctggtaatgactccaacttattgatagtgttttatgttcagatgatgcccgat > 2:214974‑M2/1‑5 (MQ=255) tacctggtaatgactccaacttattgatagtgttttatgttcagataatgcccgat < 1:310833‑M2/56‑52 (MQ=255) tacctggtaatgactccaacttattgatagtgttttatgttcagataatgcccgat > 2:310833‑M2/1‑5 (MQ=255) tacctggtaatgactccaacttattgatagtgttttatgttcagataatgcccgat < 1:214974‑M2/56‑52 (MQ=255) ttATGTCATTAAACTAGCATGCGTTAGTTAAACAGCGCCTAACTATGTCGATATTCGTGCTTTTTCGGAATGAGTCGCTTGCTTCAgcgc > 2:124332/1‑90 (MQ=255) ttATGTCATTAAACTAGCATGCGTTAGTTAAACAGCGCCTAACTATGTCGATATTCGTGCTTTTTCGGAATGAGTCGCTTGCTTCAgcgc > 1:117020/1‑90 (MQ=255) | CGCCCAAAGCAGCAAGCAAGCCAACACCACGACAACCAGAACGACCCATCGAAACTTTTTCACTCCAATCTCCGTTTCACCTACCTTATGTCATTAAACTAGCATGCGTTAGTTAAACAGCGCCTAACTATGTCGATATTCGTGCTTTTTCGGAATGAGTCGCTTGCTTCAGCGC > NZ_CP009273/1902961‑1903135 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |