Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NZ_CP009273	1781500	1781510	11	2 [0]	[0] 2	ppsA/ppsR	phosphoenolpyruvate synthase/posphoenolpyruvate synthetase regulatory kinase/phosphorylase PpsR

GCGCAAATCTGCTCTCTTCGACAATTTCCACATAAACCATC  >  NZ_CP009273/1781511‑1781551 |                                         gcgcAAATCTGCTCTCTTCGACAATTTCCACATAAACCATc  <  1:49538/41‑1 (MQ=255) gcgcAAATCTGCTCTCTTCGACAATTTCCACATAAACCATc  >  2:49538/1‑41 (MQ=255) |                                         GCGCAAATCTGCTCTCTTCGACAATTTCCACATAAACCATC  >  NZ_CP009273/1781511‑1781551

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑