Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NZ_CP009273	3448995	3449025	31	2 [1]	[1] 5	gspC	type II secretion system protein GspC

ATAGGGTCGATTATTTTTAATGTGAATTATTTCCATACAACTATAGTTAAAAATGGACAGATCATTAATCAACCAACAAACGCATTTCAGTCTGATTT  >  NZ_CP009273/3449018‑3449115         |                                                                                          aTAGGGTCGATTATTTTTAATGTGAATTATTTCCATACAACTATAGTTAAAAATGGACAGATCATTAATCAACCAACAAACGCATTTCAg          >  2:123644/1‑90 (MQ=255)         gATTATTTTTAATGTGAATTATTTCCATACAACTATAGTTAAAAATGGACAGATc                                     <  1:84555/55‑1 (MQ=255)         gATTATTTTTAATGTGAATTATTTCCATACAACTATAGTTAAAAATGGACAGATc                                     >  2:84555/1‑55 (MQ=255)         gATTATTTTTAATGTGAATTATTTCCATACAACTATAGTTAAAAATGGACAGATCATTAATCAACCAACAAACGCATTTCAGTCTGAttt  >  1:2165/1‑90 (MQ=255)         gATTATTTTTAATGTGAATTATTTCCATACAACTATAGTTAAAAATGGACAGATCATTAATCAACCAACAAACGCATTTCAGTCTGAttt  >  1:310244/1‑90 (MQ=255)         |                                                                                          ATAGGGTCGATTATTTTTAATGTGAATTATTTCCATACAACTATAGTTAAAAATGGACAGATCATTAATCAACCAACAAACGCATTTCAGTCTGATTT  >  NZ_CP009273/3449018‑3449115

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑