Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NZ_CP009273	2005849	2005869	21	2 [1]	[1] 3	BW25113_RS10120/fliE	DUF5503 domain‑containing protein/flagellar hook‑basal body complex protein FliE

GATTCAGTATTAGATGTGACTTTATTTAATTGAACCGGCTGAGTTTTTAACGAAAGATCATTTAATGGAAACATTTACACTCCTGTTTAATAAATTATATTGCCCA  >  NZ_CP009273/2005759‑2005864                                                                                          |                 gATTCAGTATTAGATGTGACTTTATTTAATTGAACCGGCTGAGTTTTTAACGAAAGATCATTTAATGGAAACATTTACACTCCTGTTtaa                  <  2:20612/90‑1 (MQ=255)                 tgACTTTATTTAATTGAACCGGCTGAGTTTTTAACGAAAGATCATTTAATGGAAACATTTACACTCCTGTTTAATAAATTATATTGCCCa  >  1:161507/1‑90 (MQ=255)                                                                                          |                 GATTCAGTATTAGATGTGACTTTATTTAATTGAACCGGCTGAGTTTTTAACGAAAGATCATTTAATGGAAACATTTACACTCCTGTTTAATAAATTATATTGCCCA  >  NZ_CP009273/2005759‑2005864

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑