Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NZ_CP009273	2005849	2005869	21	2 [1]	[1] 3	BW25113_RS10120/fliE	DUF5503 domain‑containing protein/flagellar hook‑basal body complex protein FliE

GCATTCTAAAACACAATAAAATTACCACTATCAAAAATCGCTCATATCCATCGCCCGGAATATGAATAAAAACATCAACAAAGATTAAAT  >  NZ_CP009273/2005869‑2005958  |                                                                                         gcATTCTAAAACACAATAAAATTACCACTATCAAAAATCGCTCATATCCATCGCCCGGAATATGAATAAAAACATCAACAAAGATTAAAt  <  1:161403/90‑1 (MQ=255)  cATTCTAAAACACAATAAAATTACCACTATCAAAAATCGCTCATATCCATCGccc                                    <  1:204227/55‑1 (MQ=255)  cATTCTAAAACACAATAAAATTACCACTATCAAAAATCGCTCATATCCATCGccc                                    >  2:204227/1‑55 (MQ=255)  |                                                                                         GCATTCTAAAACACAATAAAATTACCACTATCAAAAATCGCTCATATCCATCGCCCGGAATATGAATAAAAACATCAACAAAGATTAAAT  >  NZ_CP009273/2005869‑2005958

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑