Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NZ_CP009273	2666580	2666643	64	3 [1]	[1] 2	[hcaD]	[hcaD]

GCGGTCACGCTGAATCAGGGGCGTGAGATTCGCCCAATTCGCAAATGGATCCAGAGCGGCAAAACGTTTGATGCGAAACTGCTGATAGATGAGAACATCGCGCT  >  NZ_CP009273/2666492‑2666595                                                                                        |                 gCGGTCACGCTGAATCAGGGGCGTGAGATTCGCCCAATTCGCAAATGGATCCAGAGCGGCAAAACGTTTGATGCGAAACTGCTGATAg                  <  1:114648/88‑1 (MQ=255) gCGGTCACGCTGAATCAGGGGCGTGAGATTCGCCCAATTCGCAAATGGATCCAGAGCGGCAAAACGTTTGATGCGAAACTGCTGATAg                  >  2:114648/1‑88 (MQ=255)               tCAGGGGCGTGAGATTCGCCCAATTCGCAAATGGATCCAGAGCGGCAAAACGTTTGATGCGAAACTGCTGATAGATGAGAACATCGCGCt  <  1:39176/90‑1 (MQ=255)                                                                                        |                 GCGGTCACGCTGAATCAGGGGCGTGAGATTCGCCCAATTCGCAAATGGATCCAGAGCGGCAAAACGTTTGATGCGAAACTGCTGATAGATGAGAACATCGCGCT  >  NZ_CP009273/2666492‑2666595

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑