Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NZ_CP009273	1187964	1187964	1	2 [0]	[0] 3	hflD	high frequency lysogenization protein HflD

CCCGACGCGCAGGTTGGCTTCGCTACCGCCAAAAACCGCCAGCGTCGAGCTGGGGTTCATATCAATAATAC  >  NZ_CP009273/1187893‑1187963                                                                       | cccGACGCGCAGGTTGGCATCGCTACCGCCAAAAACCGCCAGCGTCGAGCTGGGGTTCATATCAATAATAc  <  1:180605/71‑1 (MQ=255) cccGACGCGCAGGTTGGCATCGCTACCGCCAAAAACCGCCAGCGTCGAGCTGGGGTTCATATCAATAATAc  >  2:180605/1‑71 (MQ=255)                                                                       | CCCGACGCGCAGGTTGGCTTCGCTACCGCCAAAAACCGCCAGCGTCGAGCTGGGGTTCATATCAATAATAC  >  NZ_CP009273/1187893‑1187963

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 17 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑