Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NZ_CP009273	1187964	1187964	1	2 [0]	[0] 3	hflD	high frequency lysogenization protein HflD

GTTGAGTGAGACGTGTAGCGCATCGGCATCACAATGCCCCTGGTGAGCGAGTTGTTGCACCAGGCGTGCCGACTGACAAATACCGGCCAG  >  NZ_CP009273/1187965‑1188054 |                                                                                          gTTGAGTGAGACGTGTAGCGCATCGGCATCACAATGCCCCTGGTGAg                                             <  1:84157/47‑1 (MQ=255) gTTGAGTGAGACGTGTAGCGCATCGGCATCACAATGCCCCTGGTGAg                                             >  2:84157/1‑47 (MQ=255) gTTGAGTGAGACGTGTAGCGCATCGGCATCACAATGCCCCTGGTGAGCGAGTTGTTGCACCAGGCGTGCCGACTGACAAATACCGGCCAg  >  1:171140/1‑90 (MQ=255) |                                                                                          GTTGAGTGAGACGTGTAGCGCATCGGCATCACAATGCCCCTGGTGAGCGAGTTGTTGCACCAGGCGTGCCGACTGACAAATACCGGCCAG  >  NZ_CP009273/1187965‑1188054

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑