Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NZ_CP009273	2474106	2474159	54	6 [0]	[0] 2	[emrY]	[emrY]

ACCAAAACCGTAAGTAAGATAAAAGCAATAGCCGCCATA  >  NZ_CP009273/2474160‑2474198 |                                       accaaaACCGTAAGTAAGATAAAAGCAATAGCCGCCATa  >  1:149579/1‑39 (MQ=255) accaaaACCGTAAGTAAGATAAAAGCAATAGCCGCCATa  <  2:149579/39‑1 (MQ=255) |                                       ACCAAAACCGTAAGTAAGATAAAAGCAATAGCCGCCATA  >  NZ_CP009273/2474160‑2474198

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑