New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NZ_CP009273 = 322269258 (2.190)8 (0.080) 8/150 3.9 3.8% coding (690/1671 nt) betA choline dehydrogenase
?NZ_CP009273 = 322352 177 (1.700)coding (607/1671 nt) betA choline dehydrogenase
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

Only 100 of 258 total aligned reads displayed.

CGCCTGCACATAACAGCACTTCTTTGTTGGCCGTTGCGCGGGTTGGGATGGTGCTGTCGCCTTCCAGCCATTCGACGCCCACCGCGCGTTTGCCGTCAAAAATGATGTGATCGGTCATAGCGTGAGTACGAATGGTCAGGTTAGGACGCGATTTGGCCTGATCGAGATAGCCACGCGC  >  NZ_CP009273/322181‑322358
                                                                                        |                                                                                         
cgcCTGCACATAACAGCACTTCTTTGTTGGCCGTTGCGCGGGTTGGGATGGTGCTGTCGCCTTCCAGCCATTCGACGCCCACCGCGCGtt                                                                                          >  2:2572318/1‑90 (MQ=255)
   cTGCACATAACAGCACTTCTTTGTTGGCCGTTGCGCGGGTTGGGATGGTGCTGTCGCCTTCCAGCCATTCGACGCCCACCGCGCGTTTGc                                                                                       <  2:3089258/90‑1 (MQ=255)
          tAACAGCACTTCTTTGTTGGCCGTTGCGCGGGTTGGGATGGTGCTGTCGCCTTCCAGCCATTCGACGCCCACCGCGCGTTTGCCGTCaaa                                                                                >  2:1972900/1‑90 (MQ=255)
          tAACAGCACTTCTTTGTTGGCCGTTGCGCGGGTTGGGATGGTGCTGTCGCCTTCCAGCCATTCGACGCCCACCGCGCGTTTGCCGTCaaa                                                                                <  1:2724095/90‑1 (MQ=255)
            aCAGCACTTCTTTGTTGGCCGTTGCGCGGGTTGGGATGGTGCTGTCGCCCTCCAGCCATTCGACGCCCACCGCGCGTTTGCCGTCaaaaa                                                                              >  1:1487627/1‑90 (MQ=255)
              aGCACTTCTTTGTTGGCCGTTGCGCGGGTTGGGATGGTGCTGTCGCCTTCCAGCCATTCGACGCCCACCGCGCGTTTGCCGTCAAAAatg                                                                            <  2:365829/90‑1 (MQ=255)
              aGCACTTCTTTGTTGGCCGTTGCGCGGGTTGGGATGGTGCTGTCGCCTTCCAGCCATTCGACGCCCACCGCGCGTTTGCCGTCAAAAatg                                                                            <  2:2724431/90‑1 (MQ=255)
              aGCACTTCTTTGTTGGCCGTTGCGCGGGTTGGGATGGTGCTGTCGCCTTCCAGCCATTCGACGCCCACCGCGCGTTTGCCGTCAAAAatg                                                                            <  2:2242396/90‑1 (MQ=255)
               gCACTTCTTTGTTGGCCGTTGCGCGGGTTGGGATGGTGCTGTCGCCTTCCAGCCATTCGACGCCCACCGCGCGTTTGCCGTCAAAAatga                                                                           <  1:2769681/90‑1 (MQ=255)
               gCACTTCTTTGTTGGCCGTTGCGCGGGTTGGGATGGTGCTGTCGCCTTCCAGCCATTCGACGCCCACCGCGCGTTTGCCGTCAAAAatga                                                                           >  1:688546/1‑90 (MQ=255)
                cACTTCTTTGTTGGCCGTTGCGCGGGTTGGGATGGTGCTGTCGCCTTCCAGCCATTCGACGCCCACCGCGCGTTTGCCGTCAAAAatgat                                                                          >  1:778613/1‑90 (MQ=255)
                  cttcttTGTTGGCCGTTGCGCGGGTTGGGATGGTGCTGTCGCCTTCCAGCCATTCGACGCCCACCGCGCGTTTGCCGTCAAAAATGAtgt                                                                        >  1:1109886/1‑90 (MQ=255)
                  cttcttTGTTGGCCGTTGCGCGGGTTGGGATGGTGCTGTCGCCTTCCAGCCATTCGACGCCCACCGCGCGTTTGCCGTCAAAAATGAtgt                                                                        >  2:1729065/1‑90 (MQ=255)
                  cttcttTGTTGGCCGTTGCGCGGGTTGGGATGGTGCTGTCGCCTTCCAGCCATTCGACGCCCACCGCGCGTTTGCCGTCAAAAATGAtgt                                                                        >  1:866344/1‑90 (MQ=255)
                    tcttTGTTGGCTGTTGCGCGGGTTGGGATGGTGCTGTCGCCTTCCAGCCATTCGACGCCCACCGCGCGTTTGCCGTCAAAAATGATGTGa                                                                      >  1:959832/1‑90 (MQ=255)
                    tcttTGTTGGCCGTTGCGCGGGTTGGGATGGTGCTGTCGCCTTCCAGCCATTCGACGCCCACCGCGCGTTTGCCGTCAAAAATGATGTGa                                                                      >  1:2994853/1‑90 (MQ=255)
                    tcttTGTTGGCCGTTGCGCGGGTTGGGATGGTGCTGTCGCCTTCCAGCCATTCGACGCCCACCGCGCGTTTGCCGTCAAAAATGATGTGa                                                                      >  2:3238157/1‑90 (MQ=255)
                    tcttTGTTGGCCGTTGCGCGGGTTGGGATGGTGCTGTCGCCTTCCAGCCATTCGACGCCCACCGCGCGTTTGCCGTCAAAAATGATGTGa                                                                      >  2:554184/1‑90 (MQ=255)
                    tcttTGTTGGCCGTTGCGCGGGTTGGGATGGTGCTGTCGCCTTCCAGCCATTCGACGCCCACCGCGCGTTTGCCGTCAAAAATGATGTGa                                                                      <  1:554184/90‑1 (MQ=255)
                    tcttTGTTGGCCGTTGCGCGGGTTGGGATGGTGCTGTCGCCTTCCAGCCATTCGACGCCCACCGCGCGTTTGCCGTCAAAAATGATGTGa                                                                      >  1:1395204/1‑90 (MQ=255)
                    tcttTGTTGGCCGTTGCGCGGGTTGGGATGGTGCTGTCGCCTTCCAGCCATTCGACGCCCACCGCGCGTTTGCCGTCAAAAATGATGTGa                                                                      >  2:388580/1‑90 (MQ=255)
                    tcttTGTTGGCCGTTGCGCGGGTTGGGATGGTGCTGTCGCCTTCCAGCCATTCGACGCCCACCGCGCGTTTGCCGTCAAAAATGATGTGa                                                                      <  1:3328924/90‑1 (MQ=255)
                    tcttTGTTGGCCGTTGCGCGGGTTGGGATGGTGCTGTCGCCTTCCAGCCATTCGACGCCCACCGCGCGTTTGCCGTCAAAAATGATGTGa                                                                      >  2:2968175/1‑90 (MQ=255)
                      tttGTTGGCCGTTGCGCGGGTTGGGATGGTGCTTTCGCCTTCCAGCCATTCGACGCCCACCGCGCGTTTGCCGTCAAAAATGATGTGATc                                                                    <  1:1962061/90‑1 (MQ=255)
                      tttGTTGGCCGTTGCGCGGGTTGGGATGGTGCTGTCGCCTTCCAGCCATTCGACGCCCACCGCGCGTTTGCCGTCAAAAATGATGTGATc                                                                    <  1:2884656/90‑1 (MQ=255)
                      tttGTTGGCCGTTGCGCGGGTTGGGATGGTGCTGTCGCCTTCCAGCCATTCGACGCCCACCGCGCGTTTGCCGTCAAAAATGATGTGATc                                                                    <  1:3238157/90‑1 (MQ=255)
                      tttGTTGGCCGTTGCGCGGGTTGGGATGGTGCTGTCGCCTTCCAGCCATTCGACGCCCACCGCGCGTTTGCCGTCAAAAATGATGTGATc                                                                    <  2:304628/90‑1 (MQ=255)
                      tttGTTGGCCGTTGCGCGGGTTGGGATGGTGCTGTCGCCTTCCAGCCATTCGACGCCCACCGCGCGTTTGCCGTCAAAAATGATGTGATc                                                                    <  1:2254812/90‑1 (MQ=255)
                      tttGTTGGCCGTTGCGCGGGTTGGGATGGTGCTGTCGCCTTCCAGCCATTCGACGCCCACCGCGCGTTTGCCGTCAAAAATGATGTGATc                                                                    <  2:1183752/90‑1 (MQ=255)
                      tttGTTGGCCGTTGCGCGGGTTGGGATGGTGCTGTCGCCTTCCAGCCATTCGACGCCCACCGCGCGTTTGCCGTCAAAAATGATGTGATc                                                                    <  1:2082567/90‑1 (MQ=255)
                      tttGTTGGCCGTTGCGCGGGTTGGGATGGTGCTGTCGCCTTCCAGCCATTCGACGCCCACCGCGCGTTTGCCGTCAAAAATGATGTGATc                                                                    <  1:1863540/90‑1 (MQ=255)
                      tttGTTGGCCGTTGCGCGGGTTGGGATGGTGCTGTCGCCTTCCAGCCATTCGACGCCCACCGCGCGTTTGCCGTCAAAAATGATGTGATc                                                                    <  2:1960608/90‑1 (MQ=255)
                      tttGTTGGCCGTTGCGCGGGTTGGGATGGTGCTGTCGCCTTCCAGCCATTCGACGCCCACCGCGCGTTTGCCGTCAAAAATGATGTGATc                                                                    <  1:1729065/90‑1 (MQ=255)
                      tttGTTGGCCGTTGCGCGGGTTGGGATGGTGCTGTCGCCTTCCAGCCATTCGACGCCCACCGCGCGTTTGCCGTCAAAAATGATGTGATc                                                                    <  1:1622721/90‑1 (MQ=255)
                      tttGTTGGCCGTTGCGCGGGTTGGGATGGTGCTGTCGCCTTCCAGCCATTCGACGCCCACCGCGCGTTTGCCGTCAAAAATGATGTGATc                                                                    <  2:574363/90‑1 (MQ=255)
                      tttGTTGGCCGTTGCGCGGGTTGGGATGGTGCTGTCGCCTTCCAGCCATTCGACGCCCACCGCGCGTTTGCCGTCAAAAATGATGTGATc                                                                    <  1:1452563/90‑1 (MQ=255)
                      tttGTTGGCCGTTGCGCGGGTTGGGATGGTGCTGTCGCCTTCCAGCCATTCGACGCCCACCGCGCGTTTGCCGTCAAAAATGATGTGATc                                                                    <  2:1395204/90‑1 (MQ=255)
                       ttgttgGCCGTTGCGCGGGTTGGGATGGTGCTGTCGCCTTCCAGCCATTCGACGCCCACCGCGCGTTTGCCGTCAAAAATGATGTGATCg                                                                   >  1:2668989/1‑90 (MQ=255)
                       ttgttgGCCGTTGCGCGGGTTGGGATGGTGCTGTCGCCTTCCAGCCATTCGACGCCCACCGCGCGTTTGCCGTCAAAAATGATGTGATCg                                                                   >  1:2799634/1‑90 (MQ=255)
                         gttgGCCGTTGCGCGGGTTGGGATGGTGCTGTCGCCTTCCAGCCATTCGACGCCCACCGCGCGTTTGCCGTCAAAAATGATGTGATc                                                                    >  2:523881/1‑87 (MQ=255)
                          ttgGCCGTTGCGCGGGTTGGGATGGTGCTGTCGCCTTCCAGCCATTCGACGCCCACCGCGCGTTTGCCGTCAAAAATGATGTGATCGGTc                                                                >  2:3279810/1‑90 (MQ=255)
                          ttgGCCGTTGCGCGGGTTGGGATGGTGCTGTCGCCTTCCAGCCATTCGACGCCCACCGCGCGTTTGCCGTCAAAAATGATGTGATCGGTc                                                                <  2:2067570/90‑1 (MQ=255)
                          ttgGCCGTTGCGCGGGTTGGGATGGTGCTGTCGCCTTCCAGCCATTCGACGCCCACCGCGCGTTTGCCGTCAAAAATGATGTGATCGGTc                                                                <  1:177284/90‑1 (MQ=255)
                            ggCCGTTGCGCGGGTTGGGATGGTGCTGTCGCCTTCCAGCCATTCGACGCCCACCGCGCGTTTGc                                                                                       <  2:1507684/65‑1 (MQ=255)
                            ggCCGTTGCGCGGGTTGGGATGGTGCTGTCGCCTTCCAGCCATTCGACGCCCACCGCGCGTTTGCCGTCAAAAATGATGTGATc                                                                    <  2:3123938/84‑1 (MQ=255)
                            ggCCGTTGCGCGGGTTGGGATGGTGCTGTCGCCTTCCAGCCATTCGACGCCCACCGCGCGTTTGCCGTCAAAAATGATGTGATCGGTCAt                                                              <  2:2327931/90‑1 (MQ=255)
                            ggCCGTTGCGCGGGTTGGGATGGTGCTGTCGCCTTCCAGCCATTCGACGCCCACCGCGCGTTTGCCGTCAAAAATGATGTGATCGGTCAt                                                              >  1:2327931/1‑90 (MQ=255)
                            ggCCGTTGCGCGGGTTGGGATGGTGCTGTCGCCTTCCAGCCATTCGACGCCCACCGCGCGTTTGCCGTCAAAAATGATGTGATCGGTCAt                                                              >  1:2480642/1‑90 (MQ=255)
                             gCCGTTGCGCGGGTTGGGATGGTGCTGTCGCCCTCCAGCCATTCGACGCCCACCGCGCGTTTGCCGTCAAAAATGATGTGATCGGTCATa                                                             <  2:1487627/90‑1 (MQ=255)
                              ccGTTGCGCGGGTTGGGATGGTGCTGTCGCCTTCCAGCCATTCGACGCCCACCGCGCGTTTGCCGTCGAAAATGATGTGATCGGTCATAg                                                            >  1:3160531/1‑90 (MQ=255)
                              ccGTTGCGCGGGTTGGGATGGTGCTGTCGCCTTCCAGCCATTCGACGCCCACCGCGCGTTTGCCGTCAAAAATGATGTGATCGGTCAt                                                              >  2:1142909/1‑88 (MQ=255)
                              ccGTTGCGCGGGTTGGGATGGTGCTGTCGCCTTCCAGCCATTCGACGCCCACCGCGCGTTTGCCGTCAAAAATGATGTGATCGGTCAt                                                              <  1:1142909/88‑1 (MQ=255)
                              ccGTTGCGCGGGTTGGGATGGTGCTGTCGCCTTCCAGCCATTCGACGCCCACCGCGCGTTTGCCGTCAAAAATGATGTGATCGGTCATAg                                                            >  2:1694142/1‑90 (MQ=255)
                              ccGTTGCGCGGGTTGGGATGGTGCTGTCGCCTTCCAGCCATTCGACGCCCACCGCGCGTTTGCCGTCAAAAATGATGTGATCGGTCATAg                                                            >  1:1344285/1‑90 (MQ=255)
                                gTTGTGCGGGTTGGGATGGTGCTGTCGCGTCCCAGCCATACAACGCCTCCCGCGCGTTTGCCGTCCAGAATGATGTGATCGGTCATAGCg                                                          <  2:856348/90‑1 (MQ=255)
                                gTTGCGCGGGTTGGGATGGTGCTGTCGCCTTCCAGCCATTCGACGCCCACCGCGCGTTTGCCGTCAAAAATGATGTGATCGGTCATAGCg                                                          <  1:3341488/90‑1 (MQ=255)
                                gTTGCGCGGGTTGGGATGGTGCTGTCGCCTTCCAGCCATTCGACGCCCACCGCGCGTTTGCCGTCAAAAATGATGTGATCGGTCATAGCg                                                          <  1:900020/90‑1 (MQ=255)
                                gTTGCGCGGGTTGGGATGGTGCTGTCGCCTTCCAGCCATTCGACGCCCACCGCGCGTTTGCCGTCAAAAATGATGTGATCGGTCATAGCg                                                          <  1:3119043/90‑1 (MQ=255)
                                gTTGCGCGGGTTGGGATGGTGCTGTCGCCTTCCAGCCATTCGACGCCCACCGCGCGTTTGCCGTCAAAAATGATGTGATCGGTCATAGCg                                                          <  1:3279810/90‑1 (MQ=255)
                                gTTGCGCGGGTTGGGATGGTGCTGTCGCCTTCCAGCCATTCGACGCCCACCGCGCGTTTGCCGTCAAAAATGATGTGATCGGTCATAGCg                                                          <  2:1346678/90‑1 (MQ=255)
                                gTTGCGCGGGTTGGGATGGTGCTGTCGCCTTCCAGCCATTCGACGCCCACCGCGCGTTTGCCGTCAAAAATGATGTGATCGGTCATAGCg                                                          <  2:726589/90‑1 (MQ=255)
                                 ttGCGCGGGTTGGGATGGTGCTGTCGCCTTCCAGCCATTCGACGCCCACCGCGCGTTTGCCGTCAAAAATGATGTGATCGGTCATAGCGt                                                         <  1:358581/90‑1 (MQ=255)
                                  tGCGCGGGTTGGGATGGTGCTGTCGCCTTCCAGCCATTCGACGCCCACCGCGCGTTTGCCGTCAAAAATGATGTGATCGGTCATAGCGTg                                                        <  1:2486752/90‑1 (MQ=255)
                                   gcgcGGGTTGGGATGGTGCTGTCGCCTTCCAGCCATTCGACGCCCACCGCGCGTTTGCCGTCAAAAATGATGTGATCGGTCATAGCGTGa                                                       <  1:616981/90‑1 (MQ=255)
                                   gcgcGGGTTGGGATGGTGCTGTCGCCTTCCAGCCATTCGACGCCCACCGCGCGTTTGCCGTCAAAAATGATGTGATCGGTCATAGCGTGa                                                       <  2:2668989/90‑1 (MQ=255)
                                          ttGGGATGGTGCTGTCGCCTTCCAGCCATTCGACGCCCACCGCGCGTTTGCCGTCAAAAATGATGTGATCGGTCATAGCGTGAGTACGaa                                                <  1:2248574/90‑1 (MQ=255)
                                          ttGGGATGGTGCTGTCGCCTTCCAGCCATTCGACGCCCACCGCGCGTTTGCCGTCAAAAATGATGTGATCGGTCATAGCGTGAGTACGaa                                                <  1:1276170/90‑1 (MQ=255)
                                              gATGGTGCTGTCGCCTTCCAGCCATTCGACGCCCACCGCGCGTTTGCCGTCAAAAATGATGTGATCGGTCATAGCGTGAGTACGAATGGt                                            <  1:1974152/90‑1 (MQ=255)
                                                  gTGCTGTCGCCTTCCAGCCATTCGACGCCCACCGCGCGTTTGCCGTCAAAAATGATGTGATc                                                                    <  1:1423115/62‑1 (MQ=255)
                                                  gTGCTGTCGCCTTCCAGCCATTCGACGCCCACCGCGCGTTTGCCGTCAAAAATGATGTGATc                                                                    >  1:537745/1‑62 (MQ=255)
                                                  gTGCTGTCGCCTTCCAGCCATTCGACGCCCACCGCGCGTTTGCCGTCAAAAATGATGTGATCGGTCATAGCGTGAGTACGAATGGTCAgg                                        >  2:934463/1‑90 (MQ=255)
                                                  gTGCTGTCGCCTTCCAGCCATTCGACGCCCACCGCGCGTTTGCCGTCAAAAATGATGTGATCGGTCATAGCGTGAGTACGAATGGTCAgg                                        >  1:2271322/1‑90 (MQ=255)
                                                  gTGCTGTCGCCTTCCAGCCATTCGACGCCCACCGCGCGTTTGCCGTCAAAAATGATGTGATCGGTCATAGCGTGAGTACGAATGGTCAgg                                        >  1:2546474/1‑90 (MQ=255)
                                                  gTGCTGTCGCCTTCCAGCCATTCGACGCCCACCGCGCGTTTGCCGTCAAAAATGATGTGATCGGTCATAGCGTGAGTACGAATGGTCAgg                                        >  1:515050/1‑90 (MQ=255)
                                                       gTCGCCTTCCAGCCATTCGACGCCCACCGCGCGTTTGCCGTCAAAAATGATGTGATCGGTCATAGCGTGAGTACGaa                                                <  1:736155/77‑1 (MQ=255)
                                                       gTCGCCTTCCAGCCATTCGACGCCCACCGCGCGTTTGCCGTCAAAAATGATGTGATCGGTCATAGCGTGAGTACGaa                                                >  2:736155/1‑77 (MQ=255)
                                                       gTCGCCTTCCAGCCATTCGACGCCCACCGCGCGTTTGCCGTCAAAAATGATGTGATCGGTCATAGCGTGAGTACGAATGGTCAGGTTAgg                                   >  2:18207/1‑90 (MQ=255)
                                                        tCGCCTTCCAGCCATTCGACGCCCACCGCGCGTTTGCCGTCAAAAATGATGTGATCGGTCATAGCGTGAGTACGAATGGTCAGGTTAGGa                                  >  1:2379702/1‑90 (MQ=255)
                                                          gCCTTCCAGCCATTCGACGCCCACCGCGCGTTTGCCGTCAAAAATGATGTGATCGGTCATAGCGTGAGTACGAATGGTCAGGTTAGGAcg                                <  2:621381/90‑1 (MQ=255)
                                                          gCCTTCCAGCCATTCGACGCCCACCGCGCGTTTGCCGTCAAAAATGATGTGATCGGTCATAGCGTGAGTACGAATGGTCAGGTTAGGAcg                                <  2:2686161/90‑1 (MQ=255)
                                                          gCCTTCCAGCCATTCGACGCCCACCGCGCGTTTGCCGTCAAAAATGATGTGATCGGTCATAGCGTGAGTACGAATGGTCAGGTTAGGAcg                                <  2:1228683/90‑1 (MQ=255)
                                                                cAGCCATTCGACGCCCACCGCGCGTTTGCCGTCAAAAATGATGTGATCGGTCATAGCGTGAGTACGAATGGTCAGGTTAGGACGCGAttt                          <  1:3141828/90‑1 (MQ=255)
                                                                 aGCCATTCGACGCCCACCGCGCGTTTGCCGTCAAAAATGATGTGATCGGTCATAGCGTGAGTACGAATGGTCAGGTTAGGACGCGATTTg                         >  1:220497/1‑90 (MQ=255)
                                                                    cATTCGACGCCCACCGCGCGTTTGCCGTCAAAAATGATGTGATCGGTCATAGCGTGAGTACGAATGGTCAGGTTAGGACGCGATTTGGcc                      <  1:2968175/90‑1 (MQ=255)
                                                                    cATTCGACGCCCACCGCGCGTTTGCCGTCAAAAATGATGTGATCGGTCATAGCGTGAGTACGAATGGTCAGGTTAGGACGCGATTTGGcc                      <  2:2473877/90‑1 (MQ=255)
                                                                       tCGACGCCCACCGCGCGTTTGCCGTCAAAAATGATGTGATCGGTCATAGCGTGAGTACGAATGGTCAGGTTAGGACGCGATTTGGCCTGa                   <  2:1109886/90‑1 (MQ=255)
                                                                         gACGCCCACCGCGCGTTTGCCGTCAAAAATGATGTGATCGGTCATAGCGTGAGTACGAATGGTCAGGTTAGGACGCGATTTGGCCTGATc                 <  2:2305309/90‑1 (MQ=255)
                                                                         gACGCCCACCGCGCGTTTGCCGTCAAAAATGATGTGATCGGTCATAGCGTGAGTACGAATGGTCAGGTTAGGACGCGATTTGGCCTGATc                 <  2:456811/90‑1 (MQ=255)
                                                                         gACGCCCACCGCGCGTTTGCCGTCAAAAATGATGTGATCGGTCATAGCGTGAGTACGAATGGTCAGGTTAGGACGCGATTTGGCCTGATc                 <  1:155024/90‑1 (MQ=255)
                                                                             cccACCGCGCGTTTGCCGTCAAAAATGATGTGATCGGTCATAGCGTGAGTACGAATGGTCAGGTTAGGACGCGATTTGGCCTGATCgaga             >  1:1439989/1‑90 (MQ=255)
                                                                                   gcgcgTTTGCCGTCAAAAATGATGTGATCGGTCATAGCGTGAGTACGAATGGTCAGGTTAGGACGCGAttt                          >  2:29337/1‑71 (MQ=255)
                                                                                   gcgcgTTTGCCGTCAAAAATGATGTGATCGGTCATAGCGTGAGTACGAATGGTCAGGTTAGGACGCGAttt                          <  1:29337/71‑1 (MQ=255)
                                                                                   gcgcgTTTGCCGTCAAAAATGATGTGATCGGTCATAGCGTGAGTACGAATGGTCAGGTTAGGACGCGATTTGGc                       >  2:810456/1‑74 (MQ=255)
                                                                                    cgcgTTTGCCGTCAAAAATGATGTGATCGGTCATAGCGTGAGTACGAATGGTCAGGTTAGGACGCGATTTGGCCTGATCGAGATAGCCAc      >  1:446340/1‑90 (MQ=255)
                                                                                      cgTTTGCCGTCAAAAATGATGTGATCGGTCATAGCGTGAGTACGAATGGTCAGGTTAGGACGCGATTTGGCCTGATCGAGATAGCCAcgc    <  1:1167714/90‑1 (MQ=255)
                                                                                       gTTTGCCGTCAAAAATGATGTGATCGGTCATAGCg                                                          <  1:652145/35‑1 (MQ=255)
                                                                                        tttGCCGTCAAAAATGATGTGATCGGTCATAGCGTGAGTACGAATGGTCAGGTTAGGACGCGATTTGGCCTGATCGAGATAGCCAcgcgc  <  1:1637537/90‑1 (MQ=255)
                                                                                        tttGCCGTCAAAAATGATGTGATCGGTCATAGCGTGAGTACGAATGGTCAGGTTAGGACGCGATTTGGCCTGATCGAGATAGCCAcgcgc  <  2:2828108/90‑1 (MQ=255)
                                                                                        tttGCCGTCAAAAATGATGTGATCGGTCATAGCGTGAGTACGAATGGTCAGGTTAGGACGCGATTTGGCCTGATCGAGATAGCCAcgcgc  <  1:1247302/90‑1 (MQ=255)
                                                                                        tttGCCGTCAAAAATGATGTGATCGGTCATAGCGTGAGTACGAATGGTCAGGTTAGGACGCGATTTGGCCTGATCGAGATAGCCAcgcgc  <  2:1275319/90‑1 (MQ=255)
                                                                                        |                                                                                         
CGCCTGCACATAACAGCACTTCTTTGTTGGCCGTTGCGCGGGTTGGGATGGTGCTGTCGCCTTCCAGCCATTCGACGCCCACCGCGCGTTTGCCGTCAAAAATGATGTGATCGGTCATAGCGTGAGTACGAATGGTCAGGTTAGGACGCGATTTGGCCTGATCGAGATAGCCACGCGC  >  NZ_CP009273/322181‑322358

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.