BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NZ_CP009273	= 322269	258 (2.190)	8 (0.080)	8/150	3.9	3.8%	coding (690/1671 nt)	betA	choline dehydrogenase
*	?	NZ_CP009273	= 322352	177 (1.700)	8 (0.080)	8/150	3.9	3.8%	coding (607/1671 nt)	betA	choline dehydrogenase
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

Only 100 of 224 total aligned reads displayed.

CGCGCGTTTGCCGTCAAAAATGATGTGATCGGTCATAGCGTGAGTACGAATGGTCAGGTTAGGACGCGATTTGGCCTGATCGAGATAGCCACGCGCGGTGCTGGCGCGACGGCCCTGCGGCGTGACGGTGCGATCCATCGGACCAAAACCTTCCTGCTGATAACCGTTGAGATCGTC  >  NZ_CP009273/322263‑322439

  cgcgTTTGCCGTCAAAAATGATGTGATCGGTCATAGCGTGAGTACGAATGGTCAGGTTAGGACGCGATTTGGCCTGATCGAGATAGCCAc                                                                                       >  1:446340/1‑90 (MQ=255)

    cgTTTGCCGTCAAAAATGATGTGATCGGTCATAGCGTGAGTACGAATGGTCAGGTTAGGACGCGATTTGGCCTGATCGAGATAGCCAcgc                                                                                     <  1:3053155/90‑1 (MQ=255)

     gTTTGCCGTCAAAAATGATGTGATCGGTCATAGCGTGAGTACGAATGGTCAGGTTAGGACGCGATTTGGCCTGATCGAGATAGCCAcgcg                                                                                    >  2:1247302/1‑90 (MQ=255)

     gTTTGCCGTCAAAAATGATGTGATCGGTCATAGCGTGAGTACGAATGGTCAGGTTAGGACGCGATTTGGCCTGATCGAGATAGCCAcgcg                                                                                    >  1:2274211/1‑90 (MQ=255)

     gTTTGCCGCCAAAAATGTTTTG‑TCGGTCATAGCGTGAGTACGAATGGTCAGGTTAGGACGCGATTTGGCCTGATCGAGATAGCCAcgcgc                                                                                   <  1:1189434/90‑1 (MQ=255)

      tttGCCGTCAAAAATGATGTGATCGGTCATAGCGTGAGTACGAATGGTCAGGTTAGGACGCGATTTGGCCTGATCGAGATAGCCAcgcgc                                                                                   <  1:1247302/90‑1 (MQ=255)

      tttGCCGTCAAAAATGATGTGATCGGTCATAGCGTGAGTACGAATGGTCAGGTTAGGACGCGATTTGGCCTGATCGAGATAGCCAcgcgc                                                                                   <  2:612711/90‑1 (MQ=255)

      tttGCCGTCAAAAATGATGTGATCGGTCATAGCGTGAGTACGAATGGTCAGGTTAGGACGCGATTTGGCCTGATCGAGATAGCCAcgcgc                                                                                   <  2:2828108/90‑1 (MQ=255)

      tttGCCGTCAAAAATGATGTGATCGGTCATAGCGTGAGTACGAATGGTCAGGTTAGGACGCGATTTGGCCTGATCGAGATAGCCAcgcgc                                                                                   <  2:553342/90‑1 (MQ=255)

      tttGCCGTCAAAAATGATGTGATCGGTCATAGCGTGAGTACGAATGGTCAGGTTAGGACGCGATTTGGCCTGATCGAGATAGCCAcgcgc                                                                                   <  2:2542848/90‑1 (MQ=255)

      tttGCCGTCAAAAATGATGTGATCGGTCATAGCGTGAGTACGAATGGTCAGGTTAGGACGCGATTTGGCCTGATCGAGATAGCCAcgcgc                                                                                   <  1:1565225/90‑1 (MQ=255)

      tttGCCGTCAAAAATGATGTGATCGGTCATAGCGTGAGTACGAATGGTCAGGTTAGGACGCGATTTGGCCTGATCGAGATAGCCAcgcgc                                                                                   <  2:1275319/90‑1 (MQ=255)

       ttGCCGTCAAAAATGATGTGATCGGTCATAGCGTGAGTACGAATGGTCAGGTTAGGACGCGATTTGGCCTGATCGAGATAGCCAcgcgcg                                                                                  >  2:1853350/1‑90 (MQ=255)

             tCAAAAATGATGTGATCGGTCATAGCGTGAGTACGAATGGTCAGGTTAGGACGCGATTTGGCCTGATCGAGATAGCCACGCGCGGTgggc                                                                            <  2:2397263/90‑4 (MQ=255)

              cAAAAATGATGTGATCGGTCATAGCGTGAGTACGAATGGTCAGGTTAGGACGCGATTTGGCCTGATCGAGATAGCCACGCGCGGTGCTgg                                                                           >  2:775710/1‑90 (MQ=255)

                    tgatgTGATCGGTCATAGCGTGAGTACGAATGGTCAGGTTAGGACGCGATTTGGCCTGATCGAGATAGCCACGCGCGGTGCTGGCGCGAc                                                                     <  1:3150491/90‑1 (MQ=255)

                      atgTGATCGGTCATAGCGTGAGTACGAATGGTCAGGTTAGGACGCGATTTGGCCTGATCGAGATAGCCACGCGCGGTGCTGGCGCGACgg                                                                   <  2:866344/90‑1 (MQ=255)

                         tgATCGGTCATAGCGTGAGTACGAATGGTCAGGTTAGGACGCGATTTGGCCTGATCGAGATAGCCAcgcgc                                                                                   <  1:148435/71‑1 (MQ=255)

                          gATCGGTCATAGCGTGAGTACGAATGGTCAGGTTAGGACGCGATTTGGCCTGATCGAGATAGCCAcgcgc                                                                                   >  1:1927900/1‑70 (MQ=255)

                          gATCGGTCATAGCGTGAGTACGAATGGTCAGGTTAGGACGCGATTTGGCCTGATCGAGATAGCCAcgcgc                                                                                   <  2:1927900/70‑1 (MQ=255)

                          gATCGGTCATAGCGTGAGTACGAATGGTCAGGTTAGGACGCGATTTGGCCTGATCGAGATAGCCACGCGCGGTGCTGGCGCGACGGCCCt                                                               >  1:847074/1‑90 (MQ=255)

                          gATCGGTCATAGCGTGAGTACGAATGGTCAGGTTAGGACGCGATTTGGCCTGATCGAGATAGCCACGCGCGGTGCTGGCGCGACGGCCCt                                                               >  1:2832918/1‑90 (MQ=255)

                          gATCGGTCATAGCGTGAGTACGAATGGTCAGGTTAGGACGCGATTTGGCCTGATCGAGATAGCCACGCGCGGTGCTGGCGCGACGGCCCt                                                               >  1:3245318/1‑90 (MQ=255)

                          gATCGGTCATAGCGTGAGTACGAATGGTCAGGTTAGGACGCGATTTGGCCTGATCGAGATAGCCACGCGCGGTGCTGGCGCGACGGCCCt                                                               >  2:3339892/1‑90 (MQ=255)

                            tCGGTCATAGCGTGAGTACGAATGGTCAGGTTAGGACGCGATTTGGCCTGATCGAGATAGCCACGCGCGGTGCTGGCGCGACGGCCCTgc                                                             <  2:3160531/90‑1 (MQ=255)

                              ggTCATAGCGTGAGTACGAATGGTCAGGTTAGGACGCGATTTGGCCTGATCGAGATAGCCACGCGCGGTGCTGGCGCGACGGCCCTgcgg                                                           >  1:2259389/1‑90 (MQ=255)

                                  aTAGCGTGAGTACGAATGGTCAGGTTAGGACGCGATTTGGCCTGATCGAGATAGCCACGCGCGGTGCTGGCGCGACGGCCCTGCGGCGTg                                                       >  2:909421/1‑90 (MQ=255)

                                  aTAGCGTGAGTACGAATGGTCAGGTTAGGACGCGATTTGGCCTGATCGAGATAGCCACGCGCGGTGCTGGCGCGACGGCCCTGCGGCGTg                                                       <  1:194501/90‑1 (MQ=255)

                                     gCGTGAGTACGAATGGTCAGGTTAGGACGCGATTTGGCCTGATCGAGATAGCCACGCGCGGTGCTGGCGCGACGGCCCTGCGGCGTGAc                                                     >  1:722340/1‑89 (MQ=255)

                                     gCGTGAGTACGAATGGTCAGGTTAGGACGCGATTTGGCCTGATCGAGATAGCCACGCGCGGTGCTGGCGCGACGGCCCTGCGGCGTGACg                                                    >  2:2698552/1‑90 (MQ=255)

                                      cGTGAGTACGAATGGTCAGGTTAGGACGCGATTTGGCCTGATCGAGATAGCCACGCGCGGTGCTGGCGCGACGGCCCTGCGGCGTGACgg                                                   <  2:1073860/90‑1 (MQ=255)

                                       gTGAGTACGAATGGTCAGGTTAGGACGCGATTTGGCCTGATCGAGATAGCCACGCGCGGTGCTGGCGCGACGGCCCTGCGGCGTGACGGt                                                  <  2:1605040/90‑1 (MQ=255)

                                        tGAGTACGAATGGTCAGGTTAGGACGCGATTTGGCCTGATCGAGATAGCCACGCGCGGTGCTGGCGCGACGGCCCTGCGGCGTGACGGTg                                                 <  1:2572318/90‑1 (MQ=255)

                                         gAGTACGAATGGTCAGGTTAGGACGCGATTTGGCCTGATCGAGATAGCCAcgcgcg                                                                                  <  2:2780527/56‑1 (MQ=255)

                                         gAGTACGAATGGTCAGGTTAGGACGCGATTTGGCCTGATCGAGATAGCCAcgcgcg                                                                                  >  1:2780527/1‑56 (MQ=255)

                                         gAGTACGAATGGTCAGGTTAGGACGCGATTTGGCCTGATCGAGATAGCCAcgcgc                                                                                   >  1:1992289/1‑55 (MQ=255)

                                         gAGTACGAATGGTCAGGTTAGGACGCGATTTGGCCTGATCGAGATAGCCAcgcgc                                                                                   <  2:2239137/55‑1 (MQ=255)

                                         gAGTACGAATGGTCAGGTTAGGACGCGATTTGGCCTGATCGAGATAGCCAcgcgc                                                                                   >  1:187780/1‑55 (MQ=255)

                                         gAGTACGAATGGTCAGGTTAGGACGCGATTTGGCCTGATCGAGATAGCCAcgcgc                                                                                   <  2:187780/55‑1 (MQ=255)

                                         gAGTACGAATGGTCAGGTTAGGACGCGATTTGGCCTGATCGAGATAGCCAcgcgc                                                                                   <  2:1992289/55‑1 (MQ=255)

                                         gAGTACGAATGGTCAGGTTAGGACGCGATTTGGCCTGATCGAGATAGCCACGCGCGGTGCTGGCGCGACGGCCCt                                                               >  2:394412/1‑75 (MQ=255)

                                         gAGTACGAATGGTCAGGTTAGGACGCGATTTGGCCTGATCGAGATAGCCACGCGCGGTGCTGGCGCGACGGCCCTGCGGCGTGACGGTGc                                                >  2:1529516/1‑90 (MQ=255)

                                         gAGTACGAATGGTCAGGTTAGGACGCGATTTGGCCTGATCGAGATAGCCACGCGCGGTGCTGGCGCGACGGCCCTGCGGCGTGACGGTGc                                                >  2:2123158/1‑90 (MQ=255)

                                         gAGTACGAATGGTCAGGTTAGGACGCGATTTGGCCTGATCGAGATAGCCACGCGCGGTGCTGGCGCGACGGCCCTGCGGCGTGACGGTGc                                                >  2:1480118/1‑90 (MQ=255)

                                         gAGTACGAATGGTCAGGTTAGGACGCGATTTGGCCTGATCGAGATAGCCACGCGCGGTGCTGGCGCGACGGCCCTGCGGCGTGACGGTGc                                                >  2:816790/1‑90 (MQ=255)

                                         gAGTACGAATGGTCAGGTTAGGACGCGATTTGGCCTGATCGAGATAGCCACGCGCGGTGCTGGCGCGACGGCCCTGCGGCGTGACGGTGc                                                >  2:102959/1‑90 (MQ=255)

                                         gAGTACGAATGGTCAGGTTAGGACGCGATTTGGCCTGATCGAGATAGCCACGCGCGGTGCTGGCGCGACGGCCCTGCGGCGTGACGGTGc                                                >  1:1121181/1‑90 (MQ=255)

                                         gAGTACGAATGGTCAGGTTAGGACGCGATTTGGCCTGATCGAGATAGCCACGCGCGGTGCTGGCGCGACGGCCCTGCGGCGTGACGGTGc                                                >  1:1301078/1‑90 (MQ=255)

                                         gAGTACGAATGGTCAGGTTAGGACGCGATTTGGCCTGATCGAGATAGCCACGCGCGGTGCTGGCGCGACGGCCCTGCGGCGTGACGGTGc                                                >  1:153518/1‑90 (MQ=255)

                                         gAGTACGAATGGTCAGGTTAGGACGCGATTTGGCCTGATCGAGATAGCCACGCGCGGTGCTGGCGCGACGGCCCTGCGGCGTGACGGTGc                                                >  1:1540281/1‑90 (MQ=255)

                                         gAGTACGAATGGTCAGGTTAGGACGCGATTTGGCCTGATCGAGATAGCCACGCGCGGTGCTGGCGCGACGGCCCTGCGGCGTGACGGTGc                                                >  1:1686690/1‑90 (MQ=255)

                                         gAGTACGAATGGTCAGGTTAGGACGCGATTTGGCCTGATCGAGATAGCCACGCGCGGTGCTGGCGCGACGGCCCTGCGGCGTGACGGTGc                                                >  1:2177115/1‑90 (MQ=255)

                                         gAGTACGAATGGTCAGGTTAGGACGCGATTTGGCCTGATCGAGATAGCCACGCGCGGTGCTGGCGCGACGGCCCTGCGGCGTGACGGTGc                                                >  1:2615523/1‑90 (MQ=255)

                                         gAGTACGAATGGTCAGGTTAGGACGCGATTTGGCCTGATCGAGATAGCCACGCGCGGTGCTGGCGCGACGGCCCTGCGGCGTGACGGTGc                                                >  1:265560/1‑90 (MQ=255)

                                         gAGTACGAATGGTCAGGTTAGGACGCGATTTGGCCTGATCGAGATAGCCACGCGCGGTGCTGGCGCGACGGCCCTGCGGCGTGACGGGGc                                                >  2:2220070/1‑90 (MQ=255)

                                           gTACGAATGGTCAGGTTAGGACGCGATTTGGCCTGATCGAGATAGCCACGCGCGGTGCTGGCGCGACGGCCCTGCGGCGTGACGGTGCGa                                              >  2:3306086/1‑90 (MQ=255)

                                           gTACGAATGGTCAGGTTAGGACGCGATTTGGCCTGATCGAGATAGCCACGCGCGGTGCTGGCGCGACGGCCCTGCGGCGTGACGGTGCGa                                              <  1:1969642/90‑1 (MQ=255)

                                             aCGAATGGTCAGGTTAGGACGCGATTTGGCCTGATCGAGATAGCCACGCGCGGTGCTGGCGCGACGGCCCTGCGGCGTGACGGTGCGATc                                            >  2:3220389/1‑90 (MQ=255)

                                             aCGAATGGTCAGGTTAGGACGCGATTTGGCCTGATCGAGATAGCCACGCGCGGTGCTGGCGCGACGGCCCTGCGGCGTGACGGTGCGATc                                            >  1:2643982/1‑90 (MQ=255)

                                                 aTGGTCAGGTTAGGACGCGATTTGGCCTGATCGAGATAGCCACGCGCGGTGCTGGCGCGACGGCCCTGCGGCGTGACGGTGCGATCCATc                                        <  1:76322/90‑1 (MQ=255)

                                                 aTGGTCAGGTTAGGACGCGATTTGGCCTGATCGAGATAGCCACGCGCGGTGCTGGCGCGACGGCCCTGCGGCGTGACGGTGCGATCCATc                                        <  2:1424342/90‑1 (MQ=255)

                                                  tGGTCAGGTTAGGACGCGATTTGGCCTGATCGAGATAGCCACGCGCGGTGCTGGCGCGACGGCCCTGCGGCGTGACGGTGCGATCCATCg                                       <  1:1009504/90‑1 (MQ=255)

                                                   ggTCAGGTTAGGACGCGATTTGGCCTGATCGAGATAGCCACGCGCGGTGCTGGCGCGACGGCCCTTCGGCGTGACGGTGCGATCCATCgg                                      >  1:2539233/1‑90 (MQ=255)

                                                   ggTCAGGTTAGGACGCGATTTGGCCTGATCGAGATAGCCACGCGCGGTGCTGGCGCGACGGCCCTGCGGCGTGACGGTGCGATCCATCgg                                      >  2:3012240/1‑90 (MQ=255)

                                                     tCAGGTTAGGACGCGATTTGGCCTGATCGAGATAGCCACGCGCGGTGCTGGCGCGACGGCCCTGCGGCGTGACGGTGCGATCCATCGGAc                                    >  1:2758878/1‑90 (MQ=255)

                                                      cAGGTTAGGACGCGATTTGGCCTGATCGAGATAGCCACGCGCGGTGCTGGCGCGACGGCCCTGCGGCGTGACGGTGCGATCCATCGGAcc                                   <  1:3235022/90‑1 (MQ=255)

                                                           tAGGACGCGATTTGGCCTGATCGAGATAGCCACGCGCGGTGCTGGCGCGACGGCCCTGCGGCGTGACGGTGCGATCCATCGGACCAAAAc                              >  1:2699004/1‑90 (MQ=255)

                                                            aGGACGCGATTTGGCCTGATCGAGATAGCCACGCGCGGTGCTGGCGCGACGGCCCTGCGGCGTGACGGTGCGATCCATCGGACCAAAAcc                             >  2:1960536/1‑90 (MQ=255)

                                                             ggACGCGATTTGGCCTGATCGAGATAGCCAcgcgc                                                                                   >  2:1317693/1‑35 (MQ=255)

                                                             ggACGCGATTTGGCCTGATCGAGATAGCCACGCGCGGTGCTGGCGCGACGGCCCTGCGGCGTGAc                                                     <  1:2955703/65‑1 (MQ=255)

                                                             ggACGCGATTTGGCCTGATCGAGATAGCCACGCGCGGTGCTGGCGCGACGGCCCTGCGGCGTGACGGTGCGATCCATCGGACCAAAACCt                            >  1:273024/1‑90 (MQ=255)

                                                             ggACGCGATTTGGCCTGATCGAGATAGCCACGCGCGGTGCTGGCGCGACGGCCCTGCGGCGGGACGGTACGATCCAGCGGCCGACAACCt                            >  2:3408360/1‑90 (MQ=255)

                                                             ggACGCGATTTGGCCTGATCGAGATAGCCACGCGCGGTGCTGGCGCGACGGCCCTGCGGCGCGACGGTGCGATCCATCGGACCAAAACCt                            >  2:1751019/1‑90 (MQ=255)

                                                              gACGCGATTTGGCCTGATCGAGATAGCCACGCGCGGTGCTGGCGCGACGGCCCTGCGGCGTGACGGTGCGATCCATCGGACCAAAACCtt                           <  2:1309072/90‑1 (MQ=255)

                                                              gACGCGATTTGGCCTGATCGAGATAGCCACGCGCGGTGCTGGCGCGACGGCCCTGCGGCGTGACGGTGCGATCCATCGGACCAAAACCtt                           >  2:2582253/1‑90 (MQ=255)

                                                                cgcgATTTGGCCTGATCGAGATAGCCACGCGCGGTGCTGGCGCGACGGCCCTGCGGCGTGACGGTGCGATCCATCGGACCAAAACCTTcc                         <  1:367039/90‑1 (MQ=255)

                                                                  cgATTTGGCCTGATCGAGATAGCCACGCGCGGTGCTGGCGCGACGGCCCTGCGGCGt                                                        <  2:1380151/57‑1 (MQ=255)

                                                                  cgATTTGGCCTGATCGAGATAGCCACGCGCGGTGCTGGCGCGACGGCCCTGCGGCGt                                                        >  1:2061919/1‑57 (MQ=255)

                                                                  cgATTTGGCCTGATCGAGATAGCCACGCGCGGTGCTGGCGCGACGGCCCTGCGGCGTGACGGTGCGATCCATCGGACCAAAACCTTCctg                       >  2:2306205/1‑90 (MQ=255)

                                                                        ggCCTGATCGAGATAGCCACGCGCGGTGCTGGCGCGACGGCCCTGCGGCGTGACGGTGCGATCCATCGGACCAAAACCTTCCTGCTGATa                 <  2:1193935/90‑1 (MQ=255)

                                                                        ggCCTGATCGAGATAGCCACGCGCGGTGCTGGCGCGACGGCCCTGCGGCGTGACGGTGCGATCCATCGGACCAAAACCTTCCTGCTGATa                 <  2:515050/90‑1 (MQ=255)

                                                                        ggCCTGATCGAGATAGCCACGCGCGGTGCTGGCGCGACGGCCCTGCGGCGTGACGGTGCGATCCATCGGACCAAAACCTTCCTGCTGATa                 <  1:882176/90‑1 (MQ=255)

                                                                        ggCCTGATCGAGATAGCCACGCGCGGTGCTGGCGCGACGGCCCTGCGGCGTGACGGTGCGATCCATCGGACCAAAACCTTCCTGCTGATa                 <  1:1413211/90‑1 (MQ=255)

                                                                         gCCTGATCGAGATAGCCACGCGCGGTGCTGGCGCGACGGCCCTGCGGCGTGACGGTGCGATCCATCGGACCAAAACCTTCCTGCTGATaa                <  1:2500514/90‑1 (MQ=255)

                                                                         gCCTGATCGAGATAGCCACGCGCGGTGCTGGCGCGACGGCCCTGCGGCGTGACGGTGCGATCCATCGGACCAAAACCTTCCTGCTGATaa                <  2:2898543/90‑1 (MQ=255)

                                                                         gCCTGATCGAGATAGCCACGCGCGGTGCTGGCGCGACGGCCCTGCGGCGTGACGGTGCGATCCATCGGACCAAAACCTTCCTGCTGATaa                <  2:3072600/90‑1 (MQ=255)

                                                                         gCCTGATCGAGATAGCCACGCGCGGTGCTGGCGCGACGGCCCTGCGGCGTGACGGTGCGACCCATCGGACCAAAACCTTCCTGCTGATaa                <  1:566079/90‑1 (MQ=255)

                                                                            tGATCGAGATAGCCACGCGCGGTGCTGGCGCGACGGCCCTGCGGCGTGACGGTGCGATCCATCGGACCAAAACCTTCCTGCTGATAACCg             >  2:1267713/1‑90 (MQ=255)

                                                                             gATCGAGATAGCCACGCGCGGTGCTGGCGCGACGGCCCTTCGGCGTGACGGTGCGATCCATCGGACCAAAACCTTCCTGCTGATAACCGt            <  2:1409547/90‑1 (MQ=255)

                                                                             gATCGAGATAGCCACGCGCGGTGCTGGCGCGACGGCCCTGCGGCGTGACGGTGCGATCCATCGGACCAAAACCTTCCTGCTGATAACCGt            >  1:1799049/1‑90 (MQ=255)

                                                                             gATCGAGATAGCCACGCGCGGTGCTGGCGCGACGGCCCTGCGGCGTGACGGTGCGATCCATCGGACCAAAACCTTCCTGCTGATAACCGt            <  2:2271322/90‑1 (MQ=255)

                                                                             gATCGAGATAGCCACGCGCGGTGCTGGCGCGACGGCCCTGCGGCGTGACGGTGCGATCCATCGGACCAAAACCTTCCTGCTGATAACCGt            <  2:1660491/90‑1 (MQ=255)

                                                                                   gaTAGCCACGCGCGGTGCTGGCGCGACGGCCCTGCGGCGTGACGGTGCGATCCATCGGACCAAAACCTTCCTGCTGATAACCGTTGAGAt      <  1:3273205/90‑1 (MQ=255)

                                                                                   gaTAGCCACGCGCGGTGCTGGCGCGACGGCCCTGCGGCGTGACGGTGCGATCCATCGGACCAAAACCTTCCTGCTGATAACCGTTGAGAt      <  2:647587/90‑1 (MQ=255)

                                                                                   gaTAGCCACGCGCGGTGCTGGCGCGACGGCCCTGCGGCGTGACGGTGCGATCCATCGGACCAAAACCTTCCTGCTGATAACCGTTGAGAt      >  1:1406858/1‑90 (MQ=255)

                                                                                       gCCACGCGCGGTGCTGGCGCGACGGCCCTGCGGCGTGAc                                                     >  1:2412958/1‑39 (MQ=255)

                                                                                       gCCACGCGCGGTGCTGGCGCGACGGCCCTGCGGCGTGAc                                                     <  2:2412958/39‑1 (MQ=255)

                                                                                       gCCACGCGCGGTGCTGGCGCGACGGCCCTGCGGCGTGACGGTGCGATCCATCGGACCAAAACCTTCCTGCTGATAACCGTTGAGATCGTc  >  1:3343546/1‑90 (MQ=255)

                                                                                       gCCACGCGCGGTGCTGGCGCGACGGCCCTGCGGCGTGACGGTGCGATCCATCGGACCAAAACCTTCCTGCTGATAACCGTTGAGATCGTc  >  1:1362052/1‑90 (MQ=255)

                                                                                       gCCACGCGCGGTGCTGGCGCGACGGCCCTGCGGCGTGACGGTGCGATCCATCGGACCAAAACCTTCCTGCTGATAACCGTTGAGATCGTc  >  1:499592/1‑90 (MQ=255)

CGCGCGTTTGCCGTCAAAAATGATGTGATCGGTCATAGCGTGAGTACGAATGGTCAGGTTAGGACGCGATTTGGCCTGATCGAGATAGCCACGCGCGGTGCTGGCGCGACGGCCCTGCGGCGTGACGGTGCGATCCATCGGACCAAAACCTTCCTGCTGATAACCGTTGAGATCGTC  >  NZ_CP009273/322263‑322439

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 25 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 35 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.